miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AGATTGACGAGTGCAAGAAGA

selected species: Physcomitrella patens



7 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM313212 AGATTGACGAGTGCAAGAAGA TTCTTGCACTCCTCCATCTCT down 3 0


Secondary structure

TTCGCAGTCGTACTTCTTGCACTCCTCCATCTCTCGCATCTCTTGCGCATTGTGGTTCTCCAACACCTGCACAGCGGCGGTCTTGTCCGGATTAGGGATCGTCTACACCAGATAAGCCACGGCGTTTTTCTCGGAGAAAAATACCATCCTTTGGTTCAACAACGGTTGCTGCGTTTTCCACGTTCGGATACAACCCTGCCCAGTTGCTGTGAGAGATTGACGAGTGCAAGAAGACCCTCTTTCC
-------------TTCTTGCACTCCTCCATCTCTC 	2
-------------TTCTTGCACTCCTCCATCT 	2
-------------TTCTTGCACTCCTCCATCTC 	2
-------------TTCTTGCACTCCTCCATCTCT 	97
--------------TCTTGCACTCCTCCATCTCT 	2
---------------CTTGCACTCCTCCATCTCT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGAGAGATTGACGAGTGCA 	11
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATTGACGAGTGCAAGAAG 	3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAAG 	5
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAAGA 	148
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAA 	1


Overlaps with: MNEST039722 MNEST039723
Overlaps with miRBase pre-miRNAs: ppt-MIR2083
HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115095 AGATTGACGAGTGCAAGAAGA TTCTTGCACTCCTCCATCTCT down 3 0


Secondary structure

TTCGCAGTCGTACTTCTTGCACTCCTCCATCTCTCGCATCTCTTGCGCATTGTGGTTCTCCAACACCTGCACAGCGGCGGTCTTGTCCGGATTAGGGATCGTCTACACCAGATAAGCCACGGCGTTTTTCTCGGAGAAAAATACCATCCTTTGGTTCAACAACGGTTGCTGCGTTTTCCACGTTCGGATACAACCCTGCCCAGTTGCTGTGAGAGATTGACGAGTGCAAGAAGACCCTCTTTCC
-------------TTCTTGCACTCCTCCATCTCT 	42
-------------TTCTTGCACTCCTCCATCT 	2
------------------------------------------------------------------------------------------------------------------------------------------AAATACCATCCTTTGGTTCA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGAGAGATTGACGAGTGCA 	21
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAAG 	3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAAGA 	125


Overlaps with: MNEST039722 MNEST039723
Overlaps with miRBase pre-miRNAs: ppt-MIR2083
HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM313213 AGATTGACGAGTGCAAGAAGA TTCTTGCACTCCTCCATCTCT down 3 0


Secondary structure

TTCGCAGTCGTACTTCTTGCACTCCTCCATCTCTCGCATCTCTTGCGCATTGTGGTTCTCCAACACCTGCACAGCGGCGGTCTTGTCCGGATTAGGGATCGTCTACACCAGATAAGCCACGGCGTTTTTCTCGGAGAAAAATACCATCCTTTGGTTCAACAACGGTTGCTGCGTTTTCCACGTTCGGATACAACCCTGCCCAGTTGCTGTGAGAGATTGACGAGTGCAAGAAGACCCTCTTTCC
-------------TTCTTGCACTCCTCCATCTCT 	91
-------------TTCTTGCACTCCTCCATCTC 	8
-------------TTCTTGCACTCCTCCATCT 	2
--------------TCTTGCACTCCTCCATCTCTC 	1
---------------------------------------------------------------------------------------------------------------------CACGGCGTTTTTCTCGGAGAAA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTCCACGTTCGGATACAACCCT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGAGAGATTGACGAGTGCA 	12
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATTGACGAGTGCAAGAAG 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAAG 	3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAAGAC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAAGA 	152
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGACGAGTGCAAGAAGA 	1


Overlaps with: MNEST039722 MNEST039723
Overlaps with miRBase pre-miRNAs: ppt-MIR2083
HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM313215 AGATTGACGAGTGCAAGAAGA TTCTTGCACTCCTCCATCTCT down 3 0


Secondary structure

TTCGCAGTCGTACTTCTTGCACTCCTCCATCTCTCGCATCTCTTGCGCATTGTGGTTCTCCAACACCTGCACAGCGGCGGTCTTGTCCGGATTAGGGATCGTCTACACCAGATAAGCCACGGCGTTTTTCTCGGAGAAAAATACCATCCTTTGGTTCAACAACGGTTGCTGCGTTTTCCACGTTCGGATACAACCCTGCCCAGTTGCTGTGAGAGATTGACGAGTGCAAGAAGACCCTCTTTCC
-------------TTCTTGCACTCCTCCATCTCT 	146
-------------TTCTTGCACTCCTCCATCTC 	2
--------------TCTTGCACTCCTCCATCTCTC 	3
---------------CTTGCACTCCTCCATCTCT 	1
-----------------------------------------------------------CCAACACCTGCACAGCGGCGG 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTTCGGATACAACCCTGCC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTGAGAGATTGACGAGTGC 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGAGAGATTGACGAGTGCA 	23
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGAGAGATTGACGAGTGC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAAGAC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAA 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAAGA 	151
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGACGAGTGCAAGAAGACCC 	1


Overlaps with: MNEST039722 MNEST039723
Overlaps with miRBase pre-miRNAs: ppt-MIR2083
HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM115096 AGATTGACGAGTGCAAGAAGA TTCTTGCACTCCTCCATCTCT down 3 0


Secondary structure

TTCGCAGTCGTACTTCTTGCACTCCTCCATCTCTCGCATCTCTTGCGCATTGTGGTTCTCCAACACCTGCACAGCGGCGGTCTTGTCCGGATTAGGGATCGTCTACACCAGATAAGCCACGGCGTTTTTCTCGGAGAAAAATACCATCCTTTGGTTCAACAACGGTTGCTGCGTTTTCCACGTTCGGATACAACCCTGCCCAGTTGCTGTGAGAGATTGACGAGTGCAAGAAGACCCTCTTTCC
-------------TTCTTGCACTCCTCCATCTCT 	105
-------------TTCTTGCACTCCTCCATCT 	1
--------------TCTTGCACTCCTCCATCTCTC 	2
--------------TCTTGCACTCCTCCATCTCT 	1
-------------------------------------ATCTCTTGCGCATTGTGGTT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------TGGTTCAACAACGGTTGCTGC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------GGTTCAACAACGGTTGCTG 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGAGAGATTGACGAGTGCA 	47
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGAGAGATTGACGAGTGCAA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGAGATTGACGAGTGCAAG 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAAGAC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAAG 	4
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAAGA 	106


Overlaps with: MNEST039722 MNEST039723
Overlaps with miRBase pre-miRNAs: ppt-MIR2083
HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM313216 AGATTGACGAGTGCAAGAAGA TTCTTGCACTCCTCCATCTCT down 3 0


Secondary structure

TTCGCAGTCGTACTTCTTGCACTCCTCCATCTCTCGCATCTCTTGCGCATTGTGGTTCTCCAACACCTGCACAGCGGCGGTCTTGTCCGGATTAGGGATCGTCTACACCAGATAAGCCACGGCGTTTTTCTCGGAGAAAAATACCATCCTTTGGTTCAACAACGGTTGCTGCGTTTTCCACGTTCGGATACAACCCTGCCCAGTTGCTGTGAGAGATTGACGAGTGCAAGAAGACCCTCTTTCC
-------------TTCTTGCACTCCTCCATCT 	1
-------------TTCTTGCACTCCTCCATCTCT 	114
-------------TTCTTGCACTCCTCCATCTC 	22
-------------TTCTTGCACTCCTCCATCTCTC 	12
-------------TTCTTGCACTCCTCCATCTCTCGC 	1
--------------TCTTGCACTCCTCCATCTCT 	4
--------------TCTTGCACTCCTCCATCTCTC 	1
---------------CTTGCACTCCTCCATCTCT 	1
-------------------------------------------------------------------------------------------------------------AGATAAGCCACGGCGTTTTTC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGAGAGATTGACGAGTGCA 	26
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGAGAGATTGACGAGTGC 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAGAGATTGACGAGTGCA 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGAGATTGACGAGTGCAAG 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGATTGACGAGTGCAAGAA 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATTGACGAGTGCAAGAAG 	6
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAAG 	15
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAAGA 	386
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAAGAC 	5
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAA 	8
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGACGAGTGCAAGAAGA 	1


Overlaps with: MNEST039722 MNEST039723
Overlaps with miRBase pre-miRNAs: ppt-MIR2083
HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Physcomitrella patens GSM313217 AGATTGACGAGTGCAAGAAGA TTCTTGCACTCCTCCATCTCT down 3 0


Secondary structure

TTCGCAGTCGTACTTCTTGCACTCCTCCATCTCTCGCATCTCTTGCGCATTGTGGTTCTCCAACACCTGCACAGCGGCGGTCTTGTCCGGATTAGGGATCGTCTACACCAGATAAGCCACGGCGTTTTTCTCGGAGAAAAATACCATCCTTTGGTTCAACAACGGTTGCTGCGTTTTCCACGTTCGGATACAACCCTGCCCAGTTGCTGTGAGAGATTGACGAGTGCAAGAAGACCCTCTTTCC
-TCGCAGTCGTACTTCTTGCAC 	1
-------------TTCTTGCACTCCTCCATCTCTC 	14
-------------TTCTTGCACTCCTCCATCTC 	15
-------------TTCTTGCACTCCTCCATCT 	1
-------------TTCTTGCACTCCTCCATCTCT 	143
--------------TCTTGCACTCCTCCATCTCTC 	5
--------------TCTTGCACTCCTCCATCTCT 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTCCACGTTCGGATACAA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGAGAGATTGACGAGTGCA 	33
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGAGATTGACGAGTGCAAG 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATTGACGAGTGCAAGAAG 	5
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATTGACGAGTGCAAGAA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAAG 	20
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAAGA 	405
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAAGAC 	8
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAA 	3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGACGAGTGCAAGAAGAC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGACGAGTGCAAGAAGA 	2


Overlaps with: MNEST039722 MNEST039723
Overlaps with miRBase pre-miRNAs: ppt-MIR2083
HuntMi prediction: not a miRNA