miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AGCCAAGGATGACTTGCCGG

selected species: Glycine max



42 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Glycine max GSM543396 CAGCCAAGGATGACTTGCCGG GGCAAGTTGTTCTTGGCTACA up 1 0


Secondary structure

AAGGTCCTCTCAACTCACAATAAGAGGTAGAAAGTAGAGTGCAGCCAAGGATGACTTGCCGGAGCAATAAGAATAAACAATAAAATGTATCTATTTATAACATTCTTCTTCTTCTTCTTCTTCTTTCACGCCGGCAAGTTGTTCTTGGCTACATTTTGTTTTCTTCTTCTACTGTGATGCTTTGCGGACTA
-----------------------------------------CAGCCAAGGATGACTTGCCGG 	73
-----------------------------------------CAGCCAAGGATGACTTGCCG 	34
------------------------------------------AGCCAAGGATGACTTGCCGG 	15


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Glycine max GSM543396 AGCCAAGGATGACTTGCCGG GGCAAGTAATCTTTGGCTGC up 1 0


Secondary structure

GTTAGGTTGAGGATGGAATGAAGCCAAGGATGACTTGCCGGAGTCATATTCCATGTGATGATGAGGCTAAATGCTTTGATCGTGAAAATTGAGTTAACCCGGCAAGTAATCTTTGGCTGCATTTTGCTCTCTTCCTGT
---------------------AGCCAAGGATGACTTGCCGG 	15


Overlaps with miRBase pre-miRNAs: gma-MIR169s
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Glycine max GSM543396 CAGCCAAGGATGACTTGCCGG GGCAAGTTGTTCTTGGCTACA up 1 0


Secondary structure

CAACTCACAATAAGAGGCAGAAAGTAGAGTGCAGCCAAGGATGACTTGCCGGAGCAATAAGCAATAATATCTATCTATTTTATCTTTCTTTTCTTCTTATTCTTTCACGCCGGCAAGTTGTTCTTGGCTACATTTTGTTTTCTTCTTCTACTGTGATGCT
-------------------------------CAGCCAAGGATGACTTGCCGG 	73
-------------------------------CAGCCAAGGATGACTTGCCG 	34
--------------------------------AGCCAAGGATGACTTGCCGG 	15


Overlaps with miRBase pre-miRNAs: gma-MIR169m
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Glycine max GSM543396 AGCCAAGGATGACTTGCCGG GGCAAGTAATCTTTGCCTGC up 2 0


Secondary structure

GTTAGCTTGAGGATGGGATGAAGCCAAGGATGACTTGCCGGAGCCATATTCCATGTGAGATGAGGCTAAATGCTTTGATCGTGGAAATTGAGTTAACCCGGCAAGTAATCTTTGCCTGCATTTTGCTCTCTTCCTGT
---------------------AGCCAAGGATGACTTGCCGG 	15


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Glycine max GSM543396 CAGCCAAGGATGACTTGCCGG GGCAAGTTGTGTTTGGCTATG up 2 0


Secondary structure

TATTATATCTACCCTAAGAGGGACTTACATGAAGAGGAAGAGAGAGTGATGCAGCCAAGGATGACTTGCCGGCGTTATTATTTGCTCATGTTCATGCTCACCGGTTTCCTTGCCGGCAAGTTGTGTTTGGCTATGTTTTGCTCTCTTCTTCTCATGTAAGTGCCACTTAGGACCAATTGTTGG
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	73
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	34
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	15

Overlaps with: MNEST003467
Overlaps with miRBase pre-miRNAs: gma-MIR169a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Glycine max GSM543396 AGCCAAGGATGACTTGCCGG GGCAGGTTATCCTGTGGCTAC up 0 1


Secondary structure

CACAAGGTTTAGGTCTCAGAGTCTTTCATGCATAGGTTCAAAGTGGAATGAAGCCAAGGATGACTTGCCGGCATTAATTTGCTATGAAGCTAGAGAGTATAGCTATTAGCTAGCTTCATTTGCTGAGTTTTCCGGCAGGTTATCCTGTGGCTACATTTGGCTTTCTTCCTCTCATGTAAGATTCTGAAGACCTTATCACATG
---------------------------------------------------AGCCAAGGATGACTTGCCGG 	15
------------------------------------------------------CAAGGATGACTTGCCGGCATT 	13


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Glycine max GSM543396 AGCCAAGGATGACTTGCCGG GGCGAGACATCTTGGCTCA up 1 1


Secondary structure

GAGGCAGAGAGAGTGCTTTTGAGCCAAGGATGACTTGCCGGCGTATGTTTGATCTCTTCTAGGACTGTTGCCGGCGAGACATCTTGGCTCATTGGTGCTCTCTTTCCAC
---------------------AGCCAAGGATGACTTGCCGG 	15


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Glycine max GSM543396 AGCCAAGGATGACTTGCCGG GGCGAGACATCTTGGTTCA up 1 1


Secondary structure

AATGATGTATGCTCAAATGTCTTGCATGAAGAGGTAGAGGGAGTGCTTTTGAGCCAAGGATGACTTGCCGGGGTAAGTATGATATCTTCTTAGGGTATTGCCGGCGAGACATCTTGGTTCATTTGTGCTCTCTTTCCCCTCATATGAGACTCAGAAATGAGCATGATTG
---------------------------------------------------AGCCAAGGATGACTTGCCGG 	15


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Glycine max GSM543396 AGCCAAGGATGACTTGCCGG GGCGAGACATCTTGGCTCA up 1 1


Secondary structure

AATGTTGTTTGCTCAAATGTCTTGCATGAAGGGGTAGAGAGAGTACTTTTGAGCCAAGGATGACTTGCCGGCCTAAGTATTATCTCTTCTTATAGGATATTGCTGGCCGGCGAGACATCTTGGCTCACTTGTGCTCCCTTTCCCCTCATATGAGACCTGGAAATGAGCTTCATTG
---------------------------------------------------AGCCAAGGATGACTTGCCGG 	15


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Glycine max GSM543396 AGCCAAGGATGACTTGCCGG GGTGAGACATCTTGACTCA up 3 1


Secondary structure

AATGTTGTGTGCTCAAATGTTTTGCATGAAGAGGTAGAGAGAGTGCTTTTGAGCCAAGGATGACTTGCCGGCGTAAGTATGGTCTCTTCTTTGGGTATTGTCGGTGAGACATCTTGACTCACTTGTGCTCTCTTTCCTTTCATATGAGACTAGAGAAAGAGCTTGATTG
---------------------------------------------------AGCCAAGGATGACTTGCCGG 	15


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Glycine max GSM543396 AGCCAAGGATGACTTGCCGG AGCGAGACATCCTTGTTCA up 2 1


Secondary structure

CTTGCATGAAGAGGTAGAGAGAGTGCTTTTGAGCCAAGGATGACTTGCCGGCGTAATTACGGGTATTGCCAGCGAGACATCCTTGTTCACTTATGCTCTCTTTTCACTCATATAAGA
-------------------------------AGCCAAGGATGACTTGCCGG 	15

Overlaps with: MNEST040453
Overlaps with miRBase pre-miRNAs: gma-MIR169e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Glycine max GSM543396 AGCCAAGGATGACTTGCCGG GGTTTAAGTCCTTCTTGGTTCT up 1 2


Secondary structure

AATTTGATTGTTCAAAAGGTAATTTGCATGAAGAGTAGATTAGTGGATGTGAGCCAAGGATGACTTGCCGGTTGTATAATAGCACCCGGTTTAAGTCCTTCTTGGTTCTTATTTACTATTCTTACTCACATGCAAAATCTTTGGACATATGCTATCG
---------------------------------------------------AGCCAAGGATGACTTGCCGG 	15

Overlaps with: MNEST040452
Overlaps with miRBase pre-miRNAs: gma-MIR169d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Glycine max GSM852280 CAGCCAAGGATGACTTGCCGG GGCAAGTTGTTCTTGGCTACA up 1 0


Secondary structure

AAGGTCCTCTCAACTCACAATAAGAGGTAGAAAGTAGAGTGCAGCCAAGGATGACTTGCCGGAGCAATAAGAATAAACAATAAAATGTATCTATTTATAACATTCTTCTTCTTCTTCTTCTTCTTTCACGCCGGCAAGTTGTTCTTGGCTACATTTTGTTTTCTTCTTCTACTGTGATGCTTTGCGGACTA
-----------------------------------------CAGCCAAGGATGACTTGCCGG 	19
------------------------------------------AGCCAAGGATGACTTGCCGG 	8


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Glycine max GSM852280 AGCCAAGGATGACTTGCCGG GGCAAGTAATCTTTGGCTGC up 1 0


Secondary structure

GTTAGGTTGAGGATGGAATGAAGCCAAGGATGACTTGCCGGAGTCATATTCCATGTGATGATGAGGCTAAATGCTTTGATCGTGAAAATTGAGTTAACCCGGCAAGTAATCTTTGGCTGCATTTTGCTCTCTTCCTGT
--------------------AAGCCAAGGATGACTTGCCGG 	6
---------------------AGCCAAGGATGACTTGCCGG 	8


Overlaps with miRBase pre-miRNAs: gma-MIR169s
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Glycine max GSM852280 CAGCCAAGGATGACTTGCCGG GGCAAGTTGTTCTTGGCTACA up 1 0


Secondary structure

CAACTCACAATAAGAGGCAGAAAGTAGAGTGCAGCCAAGGATGACTTGCCGGAGCAATAAGCAATAATATCTATCTATTTTATCTTTCTTTTCTTCTTATTCTTTCACGCCGGCAAGTTGTTCTTGGCTACATTTTGTTTTCTTCTTCTACTGTGATGCT
-------------------------------CAGCCAAGGATGACTTGCCGG 	19
--------------------------------AGCCAAGGATGACTTGCCGG 	8


Overlaps with miRBase pre-miRNAs: gma-MIR169m
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Glycine max GSM852280 AGCCAAGGATGACTTGCCGG GGCAAGTAATCTTTGCCTGC up 2 0


Secondary structure

GTTAGCTTGAGGATGGGATGAAGCCAAGGATGACTTGCCGGAGCCATATTCCATGTGAGATGAGGCTAAATGCTTTGATCGTGGAAATTGAGTTAACCCGGCAAGTAATCTTTGCCTGCATTTTGCTCTCTTCCTGT
--------------------AAGCCAAGGATGACTTGCCGG 	6
---------------------AGCCAAGGATGACTTGCCGG 	8


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Glycine max GSM852280 CAGCCAAGGATGACTTGCCGG GGCAAGTTGTGTTTGGCTATG up 2 0


Secondary structure

TATTATATCTACCCTAAGAGGGACTTACATGAAGAGGAAGAGAGAGTGATGCAGCCAAGGATGACTTGCCGGCGTTATTATTTGCTCATGTTCATGCTCACCGGTTTCCTTGCCGGCAAGTTGTGTTTGGCTATGTTTTGCTCTCTTCTTCTCATGTAAGTGCCACTTAGGACCAATTGTTGG
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	19
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	8
------------------------------------------------------------------------------------------------------------------GGCAAGTTGTGTTTGGCTATG 	5

Overlaps with: MNEST003467
Overlaps with miRBase pre-miRNAs: gma-MIR169a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Glycine max GSM852280 AGCCAAGGATGACTTGCCGG GGCGAGACATCTTGGTTCA up 1 1


Secondary structure

AATGATGTATGCTCAAATGTCTTGCATGAAGAGGTAGAGGGAGTGCTTTTGAGCCAAGGATGACTTGCCGGGGTAAGTATGATATCTTCTTAGGGTATTGCCGGCGAGACATCTTGGTTCATTTGTGCTCTCTTTCCCCTCATATGAGACTCAGAAATGAGCATGATTG
------------------------------------------------TTGAGCCAAGGATGACTTGCCGG 	1
-------------------------------------------------TGAGCCAAGGATGACTTGCCG 	3
---------------------------------------------------AGCCAAGGATGACTTGCCGG 	8


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Glycine max GSM852280 AGCCAAGGATGACTTGCCGG GGCAGGTTATCCTGTGGCTAC up 0 1


Secondary structure

CACAAGGTTTAGGTCTCAGAGTCTTTCATGCATAGGTTCAAAGTGGAATGAAGCCAAGGATGACTTGCCGGCATTAATTTGCTATGAAGCTAGAGAGTATAGCTATTAGCTAGCTTCATTTGCTGAGTTTTCCGGCAGGTTATCCTGTGGCTACATTTGGCTTTCTTCCTCTCATGTAAGATTCTGAAGACCTTATCACATG
--------------------------------------------------AAGCCAAGGATGACTTGCCGG 	6
---------------------------------------------------AGCCAAGGATGACTTGCCGG 	8
------------------------------------------------------CAAGGATGACTTGCCGGCATT 	4


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Glycine max GSM852280 AGCCAAGGATGACTTGCCGG GGCGAGACATCTTGGCTCA up 1 1


Secondary structure

GAGGCAGAGAGAGTGCTTTTGAGCCAAGGATGACTTGCCGGCGTATGTTTGATCTCTTCTAGGACTGTTGCCGGCGAGACATCTTGGCTCATTGGTGCTCTCTTTCCAC
------------------TTGAGCCAAGGATGACTTGCCGG 	1
-------------------TGAGCCAAGGATGACTTGCCG 	3
---------------------AGCCAAGGATGACTTGCCGG 	8
---------------------------------------------------ATCTCTTCTAGGACTGTTGC 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
21 Glycine max GSM852280 AGCCAAGGATGACTTGCCGG GGTTTAAGTCCTTCTTGGTTCT up 1 2


Secondary structure

AATTTGATTGTTCAAAAGGTAATTTGCATGAAGAGTAGATTAGTGGATGTGAGCCAAGGATGACTTGCCGGTTGTATAATAGCACCCGGTTTAAGTCCTTCTTGGTTCTTATTTACTATTCTTACTCACATGCAAAATCTTTGGACATATGCTATCG
-------------------------------------------------TGAGCCAAGGATGACTTGCCG 	3
---------------------------------------------------AGCCAAGGATGACTTGCCGG 	8

Overlaps with: MNEST040452
Overlaps with miRBase pre-miRNAs: gma-MIR169d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
22 Glycine max GSM852280 AGCCAAGGATGACTTGCCGG GGCGAGACATCTTGGCTCA up 1 1


Secondary structure

AATGTTGTTTGCTCAAATGTCTTGCATGAAGGGGTAGAGAGAGTACTTTTGAGCCAAGGATGACTTGCCGGCCTAAGTATTATCTCTTCTTATAGGATATTGCTGGCCGGCGAGACATCTTGGCTCACTTGTGCTCCCTTTCCCCTCATATGAGACCTGGAAATGAGCTTCATTG
------------------------------------------------TTGAGCCAAGGATGACTTGCCGG 	1
-------------------------------------------------TGAGCCAAGGATGACTTGCCG 	3
---------------------------------------------------AGCCAAGGATGACTTGCCGG 	8


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
23 Glycine max GSM852280 AGCCAAGGATGACTTGCCGG GGTGAGACATCTTGACTCA up 3 1


Secondary structure

AATGTTGTGTGCTCAAATGTTTTGCATGAAGAGGTAGAGAGAGTGCTTTTGAGCCAAGGATGACTTGCCGGCGTAAGTATGGTCTCTTCTTTGGGTATTGTCGGTGAGACATCTTGACTCACTTGTGCTCTCTTTCCTTTCATATGAGACTAGAGAAAGAGCTTGATTG
------------------------------------------------TTGAGCCAAGGATGACTTGCCGG 	1
-------------------------------------------------TGAGCCAAGGATGACTTGCCG 	3
---------------------------------------------------AGCCAAGGATGACTTGCCGG 	8


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
24 Glycine max GSM852280 AGCCAAGGATGACTTGCCGG AGCGAGACATCCTTGTTCA up 2 1


Secondary structure

CTTGCATGAAGAGGTAGAGAGAGTGCTTTTGAGCCAAGGATGACTTGCCGGCGTAATTACGGGTATTGCCAGCGAGACATCCTTGTTCACTTATGCTCTCTTTTCACTCATATAAGA
----------------------------TTGAGCCAAGGATGACTTGCCGG 	1
-----------------------------TGAGCCAAGGATGACTTGCCG 	3
-------------------------------AGCCAAGGATGACTTGCCGG 	8

Overlaps with: MNEST040453
Overlaps with miRBase pre-miRNAs: gma-MIR169e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
25 Glycine max GSM852280 CAGCCAAGGATGACTTGCCGG GGCAAGTTGGCCTTGGCTATA up 2 0


Secondary structure

AGCATATAACCACCTAAGAAGAACTTGCACGAAGAGGCAGAGAGTGTAGTGCAGCCAAGGATGACTTGCCGGCATTAGCCAAGTGAATGAGCATCATATATATATATATATATATATATATATATATGACTCATGTTCTTGTCGGCAAGTTGGCCTTGGCTATATTGGACTCTCTTCTTTTCATGTAAGTGCCACAATTAGGCTCAGTCATT
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	19
----------------------------------------------------AGCCAAGGATGACTTGCCGG 	8
-------------------------------------------------------CAAGGATGACTTGCCGGCATT 	4


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
26 Glycine max GSM543394 CAGCCAAGGATGACTTGCCGG GGCAAGTTGTTCTTGGCTACA up 1 0


Secondary structure

AAGGTCCTCTCAACTCACAATAAGAGGTAGAAAGTAGAGTGCAGCCAAGGATGACTTGCCGGAGCAATAAGAATAAACAATAAAATGTATCTATTTATAACATTCTTCTTCTTCTTCTTCTTCTTTCACGCCGGCAAGTTGTTCTTGGCTACATTTTGTTTTCTTCTTCTACTGTGATGCTTTGCGGACTA
----------------------------------------GCAGCCAAGGATGACTTGCCG 	5
-----------------------------------------CAGCCAAGGATGACTTGCCGG 	55
-----------------------------------------CAGCCAAGGATGACTTGCCG 	31


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
27 Glycine max GSM543394 AAGCCAAGGATGACTTGCCGG GGCAAGTAATCTTTGGCTGCA up 2 0


Secondary structure

GGTTAGGTTGAGGATGGAATGAAGCCAAGGATGACTTGCCGGAGTCATATTCCATGTGATGATGAGGCTAAATGCTTTGATCGTGAAAATTGAGTTAACCCGGCAAGTAATCTTTGGCTGCATTTTGCTCTCTTCCTGTA
---------------------AAGCCAAGGATGACTTGCCGG 	5


Overlaps with miRBase pre-miRNAs: gma-MIR169s
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
28 Glycine max GSM543394 CAGCCAAGGATGACTTGCCGG GGCAAGTTGTTCTTGGCTACA up 1 0


Secondary structure

CAACTCACAATAAGAGGCAGAAAGTAGAGTGCAGCCAAGGATGACTTGCCGGAGCAATAAGCAATAATATCTATCTATTTTATCTTTCTTTTCTTCTTATTCTTTCACGCCGGCAAGTTGTTCTTGGCTACATTTTGTTTTCTTCTTCTACTGTGATGCT
------------------------------GCAGCCAAGGATGACTTGCCG 	5
-------------------------------CAGCCAAGGATGACTTGCCGG 	55
-------------------------------CAGCCAAGGATGACTTGCCG 	31


Overlaps with miRBase pre-miRNAs: gma-MIR169m
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
29 Glycine max GSM543394 AAGCCAAGGATGACTTGCCGG GGCAAGTAATCTTTGCCTGCA up 3 0


Secondary structure

GGTTAGCTTGAGGATGGGATGAAGCCAAGGATGACTTGCCGGAGCCATATTCCATGTGAGATGAGGCTAAATGCTTTGATCGTGGAAATTGAGTTAACCCGGCAAGTAATCTTTGCCTGCATTTTGCTCTCTTCCTGTT
---------------------AAGCCAAGGATGACTTGCCGG 	5


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
30 Glycine max GSM543394 CAGCCAAGGATGACTTGCCGG GGCAAGTTGTGTTTGGCTATG up 2 0


Secondary structure

TATTATATCTACCCTAAGAGGGACTTACATGAAGAGGAAGAGAGAGTGATGCAGCCAAGGATGACTTGCCGGCGTTATTATTTGCTCATGTTCATGCTCACCGGTTTCCTTGCCGGCAAGTTGTGTTTGGCTATGTTTTGCTCTCTTCTTCTCATGTAAGTGCCACTTAGGACCAATTGTTGG
--------------------------------------------------GCAGCCAAGGATGACTTGCCG 	5
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	55
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	31

Overlaps with: MNEST003467
Overlaps with miRBase pre-miRNAs: gma-MIR169a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
31 Glycine max GSM543394 TGAGCCAAGGATGACTTGCCGG GGCGAGACATCTTGGCTCATT up 1 1


Secondary structure

AAGAGGCAGAGAGAGTGCTTTTGAGCCAAGGATGACTTGCCGGCGTATGTTTGATCTCTTCTAGGACTGTTGCCGGCGAGACATCTTGGCTCATTGGTGCTCTCTTTCCACTC
---------------------TGAGCCAAGGATGACTTGCCGG 	13
---------------------TGAGCCAAGGATGACTTGCCG 	10


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
32 Glycine max GSM543394 TGAGCCAAGGATGACTTGCCGG GGCGAGACATCTTGGTTCATT up 1 1


Secondary structure

TGAATGATGTATGCTCAAATGTCTTGCATGAAGAGGTAGAGGGAGTGCTTTTGAGCCAAGGATGACTTGCCGGGGTAAGTATGATATCTTCTTAGGGTATTGCCGGCGAGACATCTTGGTTCATTTGTGCTCTCTTTCCCCTCATATGAGACTCAGAAATGAGCATGATTGAA
---------------------------------------------------TGAGCCAAGGATGACTTGCCGG 	13
---------------------------------------------------TGAGCCAAGGATGACTTGCCG 	10


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
33 Glycine max GSM543394 TGAGCCAAGGATGACTTGCCGG GGTGAGACATCTTGACTCACT up 3 1


Secondary structure

GTGCTCAAATGTTTTGCATGAAGAGGTAGAGAGAGTGCTTTTGAGCCAAGGATGACTTGCCGGCGTAAGTATGGTCTCTTCTTTGGGTATTGTCGGTGAGACATCTTGACTCACTTGTGCTCTCTTTCCTTTCATATGAGACTAGAGAAAGAG
-----------------------------------------TGAGCCAAGGATGACTTGCCGG 	13
-----------------------------------------TGAGCCAAGGATGACTTGCCG 	10


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
34 Glycine max GSM543394 TGAGCCAAGGATGACTTGCCGG AGCGAGACATCCTTGTTCACT up 2 1


Secondary structure

AAGAGGTAGAGAGAGTGCTTTTGAGCCAAGGATGACTTGCCGGCGTAATTACGGGTATTGCCAGCGAGACATCCTTGTTCACTTATGCTCTCTTTTCACTC
---------------------TGAGCCAAGGATGACTTGCCGG 	13
---------------------TGAGCCAAGGATGACTTGCCG 	10

Overlaps with: MNEST040453
Overlaps with miRBase pre-miRNAs: gma-MIR169e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
35 Glycine max GSM543394 TGAGCCAAGGATGACTTGCCGG GGTTTAAGTCCTTCTTGGTTCTTA up 2 2


Secondary structure

GCAATTTGATTGTTCAAAAGGTAATTTGCATGAAGAGTAGATTAGTGGATGTGAGCCAAGGATGACTTGCCGGTTGTATAATAGCACCCGGTTTAAGTCCTTCTTGGTTCTTATTTACTATTCTTACTCACATGCAAAATCTTTGGACATATGCTATCGCT
---------------------------------------------------TGAGCCAAGGATGACTTGCCGG 	13
---------------------------------------------------TGAGCCAAGGATGACTTGCCG 	10

Overlaps with: MNEST040452
Overlaps with miRBase pre-miRNAs: gma-MIR169d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
36 Glycine max GSM543394 TGAGCCAAGGATGACTTGCCGG GGCGAGACATCTTGGCTCACT up 1 1


Secondary structure

TGAATGTTGTTTGCTCAAATGTCTTGCATGAAGGGGTAGAGAGAGTACTTTTGAGCCAAGGATGACTTGCCGGCCTAAGTATTATCTCTTCTTATAGGATATTGCTGGCCGGCGAGACATCTTGGCTCACTTGTGCTCCCTTTCCCCTCATATGAGACCTGGAAATGAGCTTCATTGAA
---------------------------------------------------TGAGCCAAGGATGACTTGCCGG 	13
---------------------------------------------------TGAGCCAAGGATGACTTGCCG 	10


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
37 Glycine max GSM543393 CAGCCAAGGATGACTTGCCGG GGCAAGTTGTTCTTGGCTACA up 1 0


Secondary structure

AAGGTCCTCTCAACTCACAATAAGAGGTAGAAAGTAGAGTGCAGCCAAGGATGACTTGCCGGAGCAATAAGAATAAACAATAAAATGTATCTATTTATAACATTCTTCTTCTTCTTCTTCTTCTTTCACGCCGGCAAGTTGTTCTTGGCTACATTTTGTTTTCTTCTTCTACTGTGATGCTTTGCGGACTA
----------------------------------------GCAGCCAAGGATGACTTGCCG 	13
-----------------------------------------CAGCCAAGGATGACTTGCCGG 	24
-----------------------------------------CAGCCAAGGATGACTTGCCG 	19


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
38 Glycine max GSM543393 AAGCCAAGGATGACTTGCCGG GGCAAGTAATCTTTGGCTGCA up 2 0


Secondary structure

GGTTAGGTTGAGGATGGAATGAAGCCAAGGATGACTTGCCGGAGTCATATTCCATGTGATGATGAGGCTAAATGCTTTGATCGTGAAAATTGAGTTAACCCGGCAAGTAATCTTTGGCTGCATTTTGCTCTCTTCCTGTA
---------------------AAGCCAAGGATGACTTGCCGG 	17


Overlaps with miRBase pre-miRNAs: gma-MIR169s
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
39 Glycine max GSM543393 CAGCCAAGGATGACTTGCCGG GGCAAGTTGTTCTTGGCTACA up 1 0


Secondary structure

CAACTCACAATAAGAGGCAGAAAGTAGAGTGCAGCCAAGGATGACTTGCCGGAGCAATAAGCAATAATATCTATCTATTTTATCTTTCTTTTCTTCTTATTCTTTCACGCCGGCAAGTTGTTCTTGGCTACATTTTGTTTTCTTCTTCTACTGTGATGCT
------------------------------GCAGCCAAGGATGACTTGCCG 	13
-------------------------------CAGCCAAGGATGACTTGCCGG 	24
-------------------------------CAGCCAAGGATGACTTGCCG 	19


Overlaps with miRBase pre-miRNAs: gma-MIR169m
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
40 Glycine max GSM543393 AAGCCAAGGATGACTTGCCGG GGCAAGTAATCTTTGCCTGCA up 3 0


Secondary structure

GGTTAGCTTGAGGATGGGATGAAGCCAAGGATGACTTGCCGGAGCCATATTCCATGTGAGATGAGGCTAAATGCTTTGATCGTGGAAATTGAGTTAACCCGGCAAGTAATCTTTGCCTGCATTTTGCTCTCTTCCTGTT
---------------------AAGCCAAGGATGACTTGCCGG 	17


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
41 Glycine max GSM543393 CAGCCAAGGATGACTTGCCGG GGCAAGTTGTGTTTGGCTATG up 2 0


Secondary structure

TATTATATCTACCCTAAGAGGGACTTACATGAAGAGGAAGAGAGAGTGATGCAGCCAAGGATGACTTGCCGGCGTTATTATTTGCTCATGTTCATGCTCACCGGTTTCCTTGCCGGCAAGTTGTGTTTGGCTATGTTTTGCTCTCTTCTTCTCATGTAAGTGCCACTTAGGACCAATTGTTGG
--------------------------------------------------GCAGCCAAGGATGACTTGCCG 	13
---------------------------------------------------CAGCCAAGGATGACTTGCCGG 	24
---------------------------------------------------CAGCCAAGGATGACTTGCCG 	19

Overlaps with: MNEST003467
Overlaps with miRBase pre-miRNAs: gma-MIR169a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
42 Glycine max GSM543393 AAGCCAAGGATGACTTGCCGG GGCAGGTTATCCTGTGGCTACA up 1 1


Secondary structure

GCATAGGTTCAAAGTGGAATGAAGCCAAGGATGACTTGCCGGCATTAATTTGCTATGAAGCTAGAGAGTATAGCTATTAGCTAGCTTCATTTGCTGAGTTTTCCGGCAGGTTATCCTGTGGCTACATTTGGCTTTCTTCCTCTC
---------------------AAGCCAAGGATGACTTGCCGG 	17
-------------------------CAAGGATGACTTGCCGGCATT 	13


HuntMi prediction: true miRNA