miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AGGAACATTCTGTGGAACGG

selected species: Ciona intestinalis



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343283-14443 AGGAACATTCTGTGGAACGGG TGTTTCACGGCGTTCCAAA up 3 2


Secondary structure

CGTCGCTTTCGAGGAACATTCTGTGGAACGGGCTGGTTTAAACCGGTCTGATCCGGTATTCGGGTTCCAGCTGTTTCACGGCGTTCCAAAAACACGAC
-----------AGGAACATTCTGTGGAACGGGCT 	93
-----------AGGAACATTCTGTGGAACGGGC 	781
-----------AGGAACATTCTGTGGAACGGG 	2297
-----------AGGAACATTCTGTGGAACGG 	16
-----------AGGAACATTCTGTGGAACG 	30
------------GGAACATTCTGTGGAACGGGC 	2
------------GGAACATTCTGTGGAACGGG 	2
--------------AACATTCTGTGGAACGGGCTGG 	1
----------------CATTCTGTGGAACGGGCTGG 	1
-----------------ATTCTGTGGAACGGGCTGG 	1
--------------------------------------------------------------------AGCTGTTTCACGGCGTTCCAAA 	2
--------------------------------------------------------------------AGCTGTTTCACGGCGTTCCAA 	12
--------------------------------------------------------------------AGCTGTTTCACGGCGTTCCA 	23
--------------------------------------------------------------------AGCTGTTTCACGGCGTTCC 	108
---------------------------------------------------------------------GCTGTTTCACGGCGTTCCA 	1
----------------------------------------------------------------------CTGTTTCACGGCGTTCCAA 	5


Overlaps with: MNEST025000 MNEST025001
Overlaps with miRBase pre-miRNAs: cin-mir-4018b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343282-14442 AGGAACATTCTGTGGAACGGG TGTTTCACGGCGTTCCAAA up 3 2


Secondary structure

CGTCGCTTTCGAGGAACATTCTGTGGAACGGGCTGGTTTAAACCGGTCTGATCCGGTATTCGGGTTCCAGCTGTTTCACGGCGTTCCAAAAACACGAC
-----------AGGAACATTCTGTGGAACGGG 	21
-----------AGGAACATTCTGTGGAACG 	1


Overlaps with: MNEST025000 MNEST025001
Overlaps with miRBase pre-miRNAs: cin-mir-4018b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Ciona intestinalis GSM343284-14444 AGGAACATTCTGTGGAACGGGC TGTTTCACGGCGTTCCAAA up 3 2


Secondary structure

CGTCGCTTTCGAGGAACATTCTGTGGAACGGGCTGGTTTAAACCGGTCTGATCCGGTATTCGGGTTCCAGCTGTTTCACGGCGTTCCAAAAACACGAC
-----------AGGAACATTCTGTGGAACGGGCT 	104
-----------AGGAACATTCTGTGGAACGGGC 	2639
-----------AGGAACATTCTGTGGAACGGG 	1587
-----------AGGAACATTCTGTGGAACGG 	26
-----------AGGAACATTCTGTGGAACG 	47
------------GGAACATTCTGTGGAACGGGCT 	1
------------GGAACATTCTGTGGAACGGGC 	2
------------GGAACATTCTGTGGAACGGG 	1
--------------AACATTCTGTGGAACGGGCTGG 	2
---------------ACATTCTGTGGAACGGGCTGG 	1
----------------CATTCTGTGGAACGGGCTGG 	2
-----------------ATTCTGTGGAACGGGCTGG 	3
--------------------------------------------------------------------AGCTGTTTCACGGCGTTCCAAA 	3
--------------------------------------------------------------------AGCTGTTTCACGGCGTTCCAA 	2
--------------------------------------------------------------------AGCTGTTTCACGGCGTTCCA 	7
--------------------------------------------------------------------AGCTGTTTCACGGCGTTCC 	35
---------------------------------------------------------------------GCTGTTTCACGGCGTTCCA 	3


Overlaps with: MNEST025000 MNEST025001
Overlaps with miRBase pre-miRNAs: cin-mir-4018b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Ciona intestinalis GSM343286 AGGAACATTCTGTGGAACGG GTTTCACGGCGTTCCAAA up 2 2


Secondary structure

CGTCGCTTTCGAGGAACATTCTGTGGAACGGGCTGGTTTAAACCGGTCTGATCCGGTATTCGGGTTCCAGCTGTTTCACGGCGTTCCAAAAACACGAC
-----------AGGAACATTCTGTGGAACGG 	326
-----------AGGAACATTCTGTGGAACG 	7
------------GGAACATTCTGTGGAACGGG 	1
---------------ACATTCTGTGGAACGGGCTG 	1
--------------------------------------------------------------------AGCTGTTTCACGGCGTTCCA 	4
--------------------------------------------------------------------AGCTGTTTCACGGCGTTCC 	1
---------------------------------------------------------------------GCTGTTTCACGGCGTTCCAA 	1
----------------------------------------------------------------------CTGTTTCACGGCGTTCCAAA 	4


Overlaps with: MNEST025000 MNEST025001
Overlaps with miRBase pre-miRNAs: cin-mir-4018b
HuntMi prediction: true miRNA