miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: AGGAACTTCCCAAGGAACAG

selected species: Ciona intestinalis



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343282-14442 AGGAACTTCCCAAGGAACAGG TGTCCCCGGGCATTCCGAA up 5 2


Secondary structure

CAACATTAACTCTGTACTTTAAGGAACTTCCCAAGGAACAGGCTAACCTTGCAGCCTGTCCCCGGGCATTCCGAAAAGTGCCGAGAACCTACA
---------------------AGGAACTTCCCAAGGAACAGGC 	41
---------------------AGGAACTTCCCAAGGAACAGG 	54
---------------------AGGAACTTCCCAAGGAACA 	1

Overlaps with: MNEST024917 MNEST024918
Overlaps with miRBase pre-miRNAs: cin-mir-4001i
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343284-14444 AGGAACTTCCCAAGGAACAGGC CTGTCCCCGGGCATTCCGAA up 5 2


Secondary structure

CAACATTAACTCTGTACTTTAAGGAACTTCCCAAGGAACAGGCTAACCTTGCAGCCTGTCCCCGGGCATTCCGAAAAGTGCCGAGAACCTACA
--------------------AAGGAACTTCCCAAGGAAC 	1
---------------------AGGAACTTCCCAAGGAACAGGCT 	3383
---------------------AGGAACTTCCCAAGGAACAGGC 	15405
---------------------AGGAACTTCCCAAGGAACAGG 	3159
---------------------AGGAACTTCCCAAGGAACAG 	27
---------------------AGGAACTTCCCAAGGAACA 	40
----------------------GGAACTTCCCAAGGAACAGGCT 	3
----------------------GGAACTTCCCAAGGAACAGGC 	5
-------------------------ACTTCCCAAGGAACAGGCT 	1
------------------------------------------------------CCTGTCCCCGGGCATTCCG 	44

Overlaps with: MNEST024917 MNEST024918
Overlaps with miRBase pre-miRNAs: cin-mir-4001i
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Ciona intestinalis GSM343286 AGGAACTTCCCAAGGAACAG GTCCCCGGGCATTCCGAA up 5 2


Secondary structure

CAACATTAACTCTGTACTTTAAGGAACTTCCCAAGGAACAGGCTAACCTTGCAGCCTGTCCCCGGGCATTCCGAAAAGTGCCGAGAACCTACA
---------------------AGGAACTTCCCAAGGAACAGGCT 	1
---------------------AGGAACTTCCCAAGGAACAGGC 	2
---------------------AGGAACTTCCCAAGGAACAGG 	8
---------------------AGGAACTTCCCAAGGAACAG 	4857
---------------------AGGAACTTCCCAAGGAACA 	43
------------------------AACTTCCCAAGGAACAGGCT 	1
------------------------------------------------------CCTGTCCCCGGGCATTCCGA 	12
------------------------------------------------------CCTGTCCCCGGGCATTCCG 	1

Overlaps with: MNEST024917 MNEST024918
Overlaps with miRBase pre-miRNAs: cin-mir-4001i
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Ciona intestinalis GSM343285 AGGAACTTCCCAAGGAACAGGC CTGTCCCCGGGCATTCCGAA up 5 2


Secondary structure

CAACATTAACTCTGTACTTTAAGGAACTTCCCAAGGAACAGGCTAACCTTGCAGCCTGTCCCCGGGCATTCCGAAAAGTGCCGAGAACCTACA
---------------------AGGAACTTCCCAAGGAACAGGCT 	1
---------------------AGGAACTTCCCAAGGAACAGGC 	7
---------------------AGGAACTTCCCAAGGAACAGG 	3
---------------------AGGAACTTCCCAAGGAACAG 	1

Overlaps with: MNEST024917 MNEST024918
Overlaps with miRBase pre-miRNAs: cin-mir-4001i
HuntMi prediction: true miRNA