miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: AGGACGAGCTAGCTGAGTGCTG

selected species: Mus musculus

17 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Mus musculus	GSM539877-5198	AGGACGAGCTAGCTGAGTGCTG	GCACTGAGCTAGCTCTCCCTCC	up	4	0

Secondary structure

GAAAGATGAACAAGGTGGTGGAGGACGAGCTAGCTGAGTGCTGCAGACACTCTAAGAGCACTGAGCTAGCTCTCCCTCCATGCCCTGCTCAATCGTG
---------------------AGGACGAGCTAGCTGAGTGCTG 	7
---------------------AGGACGAGCTAGCTGAGTG 	1

Overlaps with: MNEST032451
Overlaps with miRBase pre-miRNAs: mmu-mir-1947
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Mus musculus	GSM539838	AGGACGAGCTAGCTGAGTGCTG	GCACTGAGCTAGCTCTCCCTCC	up	4	0

Secondary structure

GAAAGATGAACAAGGTGGTGGAGGACGAGCTAGCTGAGTGCTGCAGACACTCTAAGAGCACTGAGCTAGCTCTCCCTCCATGCCCTGCTCAATCGTG
---------------------AGGACGAGCTAGCTGAGTGCTG 	7
---------------------AGGACGAGCTAGCTGAGTGC 	1
---------------------AGGACGAGCTAGCTGAGTGCT 	2

Overlaps with: MNEST032451
Overlaps with miRBase pre-miRNAs: mmu-mir-1947
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Mus musculus	GSM539850	AGGACGAGCTAGCTGAGTGCTG	GCACTGAGCTAGCTCTCCCTCC	up	4	0

Secondary structure

GAAAGATGAACAAGGTGGTGGAGGACGAGCTAGCTGAGTGCTGCAGACACTCTAAGAGCACTGAGCTAGCTCTCCCTCCATGCCCTGCTCAATCGTG
---------------------AGGACGAGCTAGCTGAGTGCTG 	12
---------------------AGGACGAGCTAGCTGAGTGC 	3
---------------------AGGACGAGCTAGCTGAGTGCT 	5
----------------------GGACGAGCTAGCTGAGTGCT 	1

Overlaps with: MNEST032451
Overlaps with miRBase pre-miRNAs: mmu-mir-1947
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Mus musculus	GSM539835	AGGACGAGCTAGCTGAGTGCTG	GCACTGAGCTAGCTCTCCCTCC	up	4	0

Secondary structure

GAAAGATGAACAAGGTGGTGGAGGACGAGCTAGCTGAGTGCTGCAGACACTCTAAGAGCACTGAGCTAGCTCTCCCTCCATGCCCTGCTCAATCGTG
---------------------AGGACGAGCTAGCTGAGTGCTG 	39
---------------------AGGACGAGCTAGCTGAGTGC 	3
---------------------AGGACGAGCTAGCTGAGTGCTGC 	1
---------------------AGGACGAGCTAGCTGAGTGCT 	12

Overlaps with: MNEST032451
Overlaps with miRBase pre-miRNAs: mmu-mir-1947
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Mus musculus	GSM539870	AGGACGAGCTAGCTGAGTGCTG	GCACTGAGCTAGCTCTCCCTCC	up	4	0

Secondary structure

GAAAGATGAACAAGGTGGTGGAGGACGAGCTAGCTGAGTGCTGCAGACACTCTAAGAGCACTGAGCTAGCTCTCCCTCCATGCCCTGCTCAATCGTG
--------------------GAGGACGAGCTAGCTGAGTGCT 	1
---------------------AGGACGAGCTAGCTGAGTGCTG 	13
---------------------AGGACGAGCTAGCTGAGTGCT 	3
---------------------AGGACGAGCTAGCTGAGTGC 	1

Overlaps with: MNEST032451
Overlaps with miRBase pre-miRNAs: mmu-mir-1947
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Mus musculus	GSM539849	AGGACGAGCTAGCTGAGTGCTG	GCACTGAGCTAGCTCTCCCTCC	up	4	0

Secondary structure

GAAAGATGAACAAGGTGGTGGAGGACGAGCTAGCTGAGTGCTGCAGACACTCTAAGAGCACTGAGCTAGCTCTCCCTCCATGCCCTGCTCAATCGTG
---------------------AGGACGAGCTAGCTGAGTGCTG 	9
---------------------AGGACGAGCTAGCTGAGTGCT 	1

Overlaps with: MNEST032451
Overlaps with miRBase pre-miRNAs: mmu-mir-1947
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Mus musculus	GSM539848	AGGACGAGCTAGCTGAGTGCTG	GCACTGAGCTAGCTCTCCCTCC	up	4	0

Secondary structure

GAAAGATGAACAAGGTGGTGGAGGACGAGCTAGCTGAGTGCTGCAGACACTCTAAGAGCACTGAGCTAGCTCTCCCTCCATGCCCTGCTCAATCGTG
---------------------AGGACGAGCTAGCTGAGTGCTG 	19
---------------------AGGACGAGCTAGCTGAGTGCT 	7

Overlaps with: MNEST032451
Overlaps with miRBase pre-miRNAs: mmu-mir-1947
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Mus musculus	GSM539872	AGGACGAGCTAGCTGAGTGCTG	GCACTGAGCTAGCTCTCCCTCC	up	4	0

Secondary structure

GAAAGATGAACAAGGTGGTGGAGGACGAGCTAGCTGAGTGCTGCAGACACTCTAAGAGCACTGAGCTAGCTCTCCCTCCATGCCCTGCTCAATCGTG
---------------------AGGACGAGCTAGCTGAGTGCTG 	31
---------------------AGGACGAGCTAGCTGAGTGC 	1
---------------------AGGACGAGCTAGCTGAGTGCTGC 	1
---------------------AGGACGAGCTAGCTGAGTGCT 	13

Overlaps with: MNEST032451
Overlaps with miRBase pre-miRNAs: mmu-mir-1947
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Mus musculus	GSM539861	AGGACGAGCTAGCTGAGTGCTG	GCACTGAGCTAGCTCTCCCTCC	up	4	0

Secondary structure

GAAAGATGAACAAGGTGGTGGAGGACGAGCTAGCTGAGTGCTGCAGACACTCTAAGAGCACTGAGCTAGCTCTCCCTCCATGCCCTGCTCAATCGTG
---------------------AGGACGAGCTAGCTGAGTGCTG 	20
---------------------AGGACGAGCTAGCTGAGTGCT 	16
---------------------AGGACGAGCTAGCTGAGTG 	1

Overlaps with: MNEST032451
Overlaps with miRBase pre-miRNAs: mmu-mir-1947
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Mus musculus	GSM539853	AGGACGAGCTAGCTGAGTGCTG	GCACTGAGCTAGCTCTCCCTCC	up	4	0

Secondary structure

GAAAGATGAACAAGGTGGTGGAGGACGAGCTAGCTGAGTGCTGCAGACACTCTAAGAGCACTGAGCTAGCTCTCCCTCCATGCCCTGCTCAATCGTG
---------------------AGGACGAGCTAGCTGAGTGCTG 	20
---------------------AGGACGAGCTAGCTGAGTGC 	1
---------------------AGGACGAGCTAGCTGAGTGCT 	10

Overlaps with: MNEST032451
Overlaps with miRBase pre-miRNAs: mmu-mir-1947
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Mus musculus	GSM539871	AGGACGAGCTAGCTGAGTGCTG	GCACTGAGCTAGCTCTCCCTCC	up	4	0

Secondary structure

GAAAGATGAACAAGGTGGTGGAGGACGAGCTAGCTGAGTGCTGCAGACACTCTAAGAGCACTGAGCTAGCTCTCCCTCCATGCCCTGCTCAATCGTG
---------------------AGGACGAGCTAGCTGAGTGCTG 	8
---------------------AGGACGAGCTAGCTGAGTGCT 	5
---------------------AGGACGAGCTAGCTGAGTGC 	1

Overlaps with: MNEST032451
Overlaps with miRBase pre-miRNAs: mmu-mir-1947
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Mus musculus	GSM539878	AGGACGAGCTAGCTGAGTGCTG	GCACTGAGCTAGCTCTCCCTCC	up	4	0

Secondary structure

GAAAGATGAACAAGGTGGTGGAGGACGAGCTAGCTGAGTGCTGCAGACACTCTAAGAGCACTGAGCTAGCTCTCCCTCCATGCCCTGCTCAATCGTG
---------------------AGGACGAGCTAGCTGAGTGCTG 	13
---------------------AGGACGAGCTAGCTGAGTGCT 	2

Overlaps with: MNEST032451
Overlaps with miRBase pre-miRNAs: mmu-mir-1947
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Mus musculus	GSM539875	AGGACGAGCTAGCTGAGTGCTG	GCACTGAGCTAGCTCTCCCTCC	up	4	0

Secondary structure

GAAAGATGAACAAGGTGGTGGAGGACGAGCTAGCTGAGTGCTGCAGACACTCTAAGAGCACTGAGCTAGCTCTCCCTCCATGCCCTGCTCAATCGTG
---------------------AGGACGAGCTAGCTGAGTGCTG 	5
---------------------AGGACGAGCTAGCTGAGTGCT 	3
---------------------AGGACGAGCTAGCTGAGTG 	1
----------------------GGACGAGCTAGCTGAGTGCT 	1

Overlaps with: MNEST032451
Overlaps with miRBase pre-miRNAs: mmu-mir-1947
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Mus musculus	GSM539857	AGGACGAGCTAGCTGAGTGCTG	GCACTGAGCTAGCTCTCCCTCC	up	4	0

Secondary structure

GAAAGATGAACAAGGTGGTGGAGGACGAGCTAGCTGAGTGCTGCAGACACTCTAAGAGCACTGAGCTAGCTCTCCCTCCATGCCCTGCTCAATCGTG
---------------------AGGACGAGCTAGCTGAGTGCTG 	11
---------------------AGGACGAGCTAGCTGAGTGCT 	7
---------------------AGGACGAGCTAGCTGAGTGC 	1

Overlaps with: MNEST032451
Overlaps with miRBase pre-miRNAs: mmu-mir-1947
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Mus musculus	GSM539867	AGGACGAGCTAGCTGAGTGCTG	GCACTGAGCTAGCTCTCCCTCC	up	4	0

Secondary structure

GAAAGATGAACAAGGTGGTGGAGGACGAGCTAGCTGAGTGCTGCAGACACTCTAAGAGCACTGAGCTAGCTCTCCCTCCATGCCCTGCTCAATCGTG
---------------------AGGACGAGCTAGCTGAGTGCTG 	18
---------------------AGGACGAGCTAGCTGAGTGCT 	3
---------------------AGGACGAGCTAGCTGAGTG 	1

Overlaps with: MNEST032451
Overlaps with miRBase pre-miRNAs: mmu-mir-1947
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Mus musculus	GSM539854	AGGACGAGCTAGCTGAGTGCTG	GCACTGAGCTAGCTCTCCCTCC	up	4	0

Secondary structure

GAAAGATGAACAAGGTGGTGGAGGACGAGCTAGCTGAGTGCTGCAGACACTCTAAGAGCACTGAGCTAGCTCTCCCTCCATGCCCTGCTCAATCGTG
---------------------AGGACGAGCTAGCTGAGTGCTG 	8
---------------------AGGACGAGCTAGCTGAGTGCT 	3

Overlaps with: MNEST032451
Overlaps with miRBase pre-miRNAs: mmu-mir-1947
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Mus musculus	GSM539874	AGGACGAGCTAGCTGAGTGCTG	GCACTGAGCTAGCTCTCCCTCC	up	4	0

Secondary structure

GAAAGATGAACAAGGTGGTGGAGGACGAGCTAGCTGAGTGCTGCAGACACTCTAAGAGCACTGAGCTAGCTCTCCCTCCATGCCCTGCTCAATCGTG
---------------------AGGACGAGCTAGCTGAGTGCTG 	8
---------------------AGGACGAGCTAGCTGAGTGCT 	6

Overlaps with: MNEST032451
Overlaps with miRBase pre-miRNAs: mmu-mir-1947
HuntMi prediction: true miRNA