miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: AGGACGGGAAGGTGTCAACGTT

selected species: Drosophila melanogaster



7 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM360257-14325 AGGACGGGAAGGTGTCAACGTT CATTGCACTTGTCCCGGCCTAT up 2 2


Secondary structure

GAATTTCCCGTAGGACGGGAAGGTGTCAACGTTTTGCATTTCGAATAAACATTGCACTTGTCCCGGCCTATGGGCGGTT
-----------AGGACGGGAAGGTGTCAACGTTT 	3
-----------AGGACGGGAAGGTGTCAACG 	2
-----------AGGACGGGAAGGTGTCAACGTT 	14
-------------------------------------------------CATTGCACTTGTCCCGGCCTA 	1
-------------------------------------------------CATTGCACTTGTCCCGGCCTAT 	6


Overlaps with: MNEST036379 MNEST036380
Overlaps with miRBase pre-miRNAs: dse-mir-92a dsi-mir-92a dme-mir-92a der-mir-92a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM399107-16288 AGGACGGGAAGGTGTCAACGTT CATTGCACTTGTCCCGGCCTAT up 2 2


Secondary structure

GAATTTCCCGTAGGACGGGAAGGTGTCAACGTTTTGCATTTCGAATAAACATTGCACTTGTCCCGGCCTATGGGCGGTT
-----------AGGACGGGAAGGTGTCAAC 	3
-----------AGGACGGGAAGGTGTCAACGTTTT 	1
-----------AGGACGGGAAGGTGTCAACGT 	6
-----------AGGACGGGAAGGTGTCAACGTTT 	8
-----------AGGACGGGAAGGTGTCAACGTT 	113
-----------AGGACGGGAAGGTGTCAACG 	22
-------------------------------------------------CATTGCACTTGTCCCGGCCT 	2
-------------------------------------------------CATTGCACTTGTCCCGGCCTA 	12
-------------------------------------------------CATTGCACTTGTCCCGGCCTAT 	97
--------------------------------------------------ATTGCACTTGTCCCGGCCTAT 	1


Overlaps with: MNEST036379 MNEST036380
Overlaps with miRBase pre-miRNAs: dse-mir-92a dsi-mir-92a dme-mir-92a der-mir-92a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM466487_wt_total AGGACGGGAAGGTGTCAACGTT CATTGCACTTGTCCCGGCCTAT up 2 2


Secondary structure

GAATTTCCCGTAGGACGGGAAGGTGTCAACGTTTTGCATTTCGAATAAACATTGCACTTGTCCCGGCCTATGGGCGGTT
-----------AGGACGGGAAGGTGTCAACGTTT 	5
-----------AGGACGGGAAGGTGTCAACGTT 	106
-----------AGGACGGGAAGGTGTCAACG 	3
-----------AGGACGGGAAGGTGTCAACGT 	49
------------GGACGGGAAGGTGTCAACGTT 	3
------------GGACGGGAAGGTGTCAACGT 	3
-------------------------------------------------CATTGCACTTGTCCCGGCCT 	4
-------------------------------------------------CATTGCACTTGTCCCGGCCTA 	8
-------------------------------------------------CATTGCACTTGTCCCGGCCTAT 	25
--------------------------------------------------ATTGCACTTGTCCCGGCCTAT 	1


Overlaps with: MNEST036379 MNEST036380
Overlaps with miRBase pre-miRNAs: dse-mir-92a dsi-mir-92a dme-mir-92a der-mir-92a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM343833-15151 AGGACGGGAAGGTGTCAACGTT CATTGCACTTGTCCCGGCCTAT up 2 2


Secondary structure

GAATTTCCCGTAGGACGGGAAGGTGTCAACGTTTTGCATTTCGAATAAACATTGCACTTGTCCCGGCCTATGGGCGGTT
-----------AGGACGGGAAGGTGTCAACGTTT 	1
-----------AGGACGGGAAGGTGTCAACG 	1
-----------AGGACGGGAAGGTGTCAACGT 	11
-----------AGGACGGGAAGGTGTCAACGTT 	25
-------------------------------------------------CATTGCACTTGTCCCGGCCT 	4
-------------------------------------------------CATTGCACTTGTCCCGGCCTA 	4
-------------------------------------------------CATTGCACTTGTCCCGGCCTAT 	4


Overlaps with: MNEST036379 MNEST036380
Overlaps with miRBase pre-miRNAs: dse-mir-92a dsi-mir-92a dme-mir-92a der-mir-92a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Drosophila melanogaster GSM343832-15149 AGGACGGGAAGGTGTCAACGTT CATTGCACTTGTCCCGGCCTAT up 2 2


Secondary structure

GAATTTCCCGTAGGACGGGAAGGTGTCAACGTTTTGCATTTCGAATAAACATTGCACTTGTCCCGGCCTATGGGCGGTT
-----------AGGACGGGAAGGTGTCAAC 	1
-----------AGGACGGGAAGGTGTCAACGT 	7
-----------AGGACGGGAAGGTGTCAACGTT 	28
-------------------------------------------------CATTGCACTTGTCCCGGCCT 	4
-------------------------------------------------CATTGCACTTGTCCCGGCCTA 	9
-------------------------------------------------CATTGCACTTGTCCCGGCCTAT 	7


Overlaps with: MNEST036379 MNEST036380
Overlaps with miRBase pre-miRNAs: dse-mir-92a dsi-mir-92a dme-mir-92a der-mir-92a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Drosophila melanogaster GSM322543-14323 AGGACGGGAAGGTGTCAACGTT CATTGCACTTGTCCCGGCCTAT up 2 2


Secondary structure

GAATTTCCCGTAGGACGGGAAGGTGTCAACGTTTTGCATTTCGAATAAACATTGCACTTGTCCCGGCCTATGGGCGGTT
-----------AGGACGGGAAGGTGTCAACGTTT 	24
-----------AGGACGGGAAGGTGTCAAC 	5
-----------AGGACGGGAAGGTGTCAACGTT 	1282
-----------AGGACGGGAAGGTGTCAACG 	181
-----------AGGACGGGAAGGTGTCAACGT 	88
------------GGACGGGAAGGTGTCAACGTT 	18
------------GGACGGGAAGGTGTCAACGT 	2
------------------------------------------------ACATTGCACTTGTCCCGGCCTAT 	2
-------------------------------------------------CATTGCACTTGTCCCGGCCT 	17
-------------------------------------------------CATTGCACTTGTCCCGGCCTA 	103
-------------------------------------------------CATTGCACTTGTCCCGGCCTAT 	547
--------------------------------------------------ATTGCACTTGTCCCGGCCTAT 	8


Overlaps with: MNEST036379 MNEST036380
Overlaps with miRBase pre-miRNAs: dse-mir-92a dsi-mir-92a dme-mir-92a der-mir-92a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Drosophila melanogaster GSM399101-5265 AGGACGGGAAGGTGTCAACGTT CATTGCACTTGTCCCGGCCTAT up 2 2


Secondary structure

GAATTTCCCGTAGGACGGGAAGGTGTCAACGTTTTGCATTTCGAATAAACATTGCACTTGTCCCGGCCTATGGGCGGTT
-----------AGGACGGGAAGGTGTCAACG 	1
-----------AGGACGGGAAGGTGTCAACGTT 	6
-------------------------------------------------CATTGCACTTGTCCCGGCCT 	3
-------------------------------------------------CATTGCACTTGTCCCGGCCTAT 	3


Overlaps with: MNEST036379 MNEST036380
Overlaps with miRBase pre-miRNAs: dse-mir-92a dsi-mir-92a dme-mir-92a der-mir-92a
HuntMi prediction: true miRNA