miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: AGGATATGAGACGACGAGAACA

selected species: Caenorhabditis elegans

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Caenorhabditis elegans	GSM427344-5691	AGGATATGAGACGACGAGAACA	TACCCGTAATCTTCATAATCCGAG	up	6	2

Secondary structure

TGGAATTGGTAATGTGAGTCGCGCTCTGACTAGGATATGAGACGACGAGAACATTGCTTTTTTAAAAGACTTGTACCCGTAATCTTCATAATCCGAGTCAGGGCTAGCTGACCATAAACATGCCT
------------------------------TAGGATATGAGACGACGAGAACA 	23
------------------------------TAGGATATGAGACGACGAGAAC 	2
------------------------------TAGGATATGAGACGACGAG 	1
-------------------------------AGGATATGAGACGACGAGAACATT 	15
-------------------------------AGGATATGAGACGACGAGAACAT 	88
-------------------------------AGGATATGAGACGACGAGAACA 	11363
-------------------------------AGGATATGAGACGACGAGAAC 	1207
-------------------------------AGGATATGAGACGACGAGAA 	455
-------------------------------AGGATATGAGACGACGAGA 	89
-------------------------------AGGATATGAGACGACGAGAACATTG 	1
--------------------------------GGATATGAGACGACGAGAACA 	1
---------------------------------GATATGAGACGACGAGAACA 	2
----------------------------------ATATGAGACGACGAGAACA 	3
------------------------------------ATGAGACGACGAGAACATT 	1
-------------------------------------------------------------------------TACCCGTAATCTTCATAATCCGAG 	232
-------------------------------------------------------------------------TACCCGTAATCTTCATAATCCGA 	3
-------------------------------------------------------------------------TACCCGTAATCTTCATAATCC 	1

Overlaps with: MNEST038291 MNEST038292
Overlaps with miRBase pre-miRNAs: cel-mir-54
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Caenorhabditis elegans	GSM427297-5679	AGGATATGAGACGACGAGAACA	TACCCGTAATCTTCATAATCCGAG	up	6	2

Secondary structure

TGGAATTGGTAATGTGAGTCGCGCTCTGACTAGGATATGAGACGACGAGAACATTGCTTTTTTAAAAGACTTGTACCCGTAATCTTCATAATCCGAGTCAGGGCTAGCTGACCATAAACATGCCT
-------------------------------AGGATATGAGACGACGAGAACA 	101
-------------------------------AGGATATGAGACGACGAGAAC 	15
-------------------------------AGGATATGAGACGACGAGAA 	4
-------------------------------------------------------------------------TACCCGTAATCTTCATAATCCGAG 	15

Overlaps with: MNEST038291 MNEST038292
Overlaps with miRBase pre-miRNAs: cel-mir-54
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Caenorhabditis elegans	GSM427301-5681	AGGATATGAGACGACGAGAACA	TACCCGTAATCTTCATAATCCGAG	up	6	2

Secondary structure

TGGAATTGGTAATGTGAGTCGCGCTCTGACTAGGATATGAGACGACGAGAACATTGCTTTTTTAAAAGACTTGTACCCGTAATCTTCATAATCCGAGTCAGGGCTAGCTGACCATAAACATGCCT
-------------------------------AGGATATGAGACGACGAGAACA 	67
-------------------------------AGGATATGAGACGACGAGAAC 	8
-------------------------------AGGATATGAGACGACGAGAA 	1
-------------------------------AGGATATGAGACGACGAGAACAT 	1
-------------------------------------------------------------------------TACCCGTAATCTTCATAATCCGAG 	6

Overlaps with: MNEST038291 MNEST038292
Overlaps with miRBase pre-miRNAs: cel-mir-54
HuntMi prediction: true miRNA