miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AGGCAAGATGTTGGCATAGCTG

selected species: Gallus gallus



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Gallus gallus GSM388803 AGGCAAGATGTTGGCATAGCTG TGCTATGCCAACATATTGTCATC up 3 0


Secondary structure

AGCTGGAGGGGAGGCAAGATGTTGGCATAGCTGTTAACCTAAAAACCTGCTATGCCAACATATTGTCATCTTTCCTGT
-----------AGGCAAGATGTTGGCATAGCTGT 	64
-----------AGGCAAGATGTTGGCATAGCTG 	1317
-----------AGGCAAGATGTTGGCATAGCT 	384
-----------AGGCAAGATGTTGGCATAGC 	140
-----------AGGCAAGATGTTGGCATAG 	51


Overlaps with: MNEST025922
Overlaps with miRBase pre-miRNAs: gga-mir-31
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Gallus gallus GSM523740_broiler_clean_reads_field_16-30 AGGCAAGATGTTGGCATAGCTG TGCTATGCCAACATATTGTCATC up 3 0


Secondary structure

AGCTGGAGGGGAGGCAAGATGTTGGCATAGCTGTTAACCTAAAAACCTGCTATGCCAACATATTGTCATCTTTCCTGT
-----------AGGCAAGATGTTGGCATAGCT 	6
-----------AGGCAAGATGTTGGCATAGCTG 	50
-----------AGGCAAGATGTTGGCATAGCTGT 	20
-----------AGGCAAGATGTTGGCATAGC 	2
-------------------------------------------------CTATGCCAACATATTGTCATCT 	1


Overlaps with: MNEST025922
Overlaps with miRBase pre-miRNAs: gga-mir-31
HuntMi prediction: true miRNA