miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AGGCAGCGGGGTGTAGTGGAT

selected species: Sus scrofa



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636844 AGGCAGCGGGGTGTAGTGGAT CCATTACACTACCCTGCCTCT down 1 2


Secondary structure

NNNNCGCTCTCTCCATTACACTACCCTGCCTCTTCTCCACGAGAGGCAGCGGGGTGTAGTGGATAGAGCACGG
-----------TCCATTACACTACCCTGCCTCTT 	1
-----------TCCATTACACTACCCTGCC 	1
-----------TCCATTACACTACCCTGCCTCT 	17
------------------------------------------GAGGCAGCGGGGTGTAGTGGAT 	2
-------------------------------------------AGGCAGCGGGGTGTAGTGG 	20
-------------------------------------------AGGCAGCGGGGTGTAGTGGATA 	186
-------------------------------------------AGGCAGCGGGGTGTAGTGGATAG 	1
-------------------------------------------AGGCAGCGGGGTGTAGTGGAT 	299
-------------------------------------------AGGCAGCGGGGTGTAGTGGA 	48



HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Sus scrofa GSM636847 AGGCAGCGGGGTGTAGTGGAT CCATTACACTACCCTGCCTCT down 1 2


Secondary structure

NNNNCGCTCTCTCCATTACACTACCCTGCCTCTTCTCCACGAGAGGCAGCGGGGTGTAGTGGATAGAGCACGG
-----------TCCATTACACTACCCTGCCTCTT 	1
-----------TCCATTACACTACCCTGCCT 	1
-----------TCCATTACACTACCCTGCCTCT 	30
-------------------------------------------AGGCAGCGGGGTGTAGTGG 	22
-------------------------------------------AGGCAGCGGGGTGTAGTGGATAGA 	3
-------------------------------------------AGGCAGCGGGGTGTAGTGGAT 	857
-------------------------------------------AGGCAGCGGGGTGTAGTGGATA 	518
-------------------------------------------AGGCAGCGGGGTGTAGTGGATAG 	6
-------------------------------------------AGGCAGCGGGGTGTAGTGGA 	128
--------------------------------------------GGCAGCGGGGTGTAGTGGATA 	1
--------------------------------------------GGCAGCGGGGTGTAGTGGAT 	1
--------------------------------------------GGCAGCGGGGTGTAGTGGA 	1
--------------------------------------------GGCAGCGGGGTGTAGTGGATAG 	3



HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Sus scrofa GSM636849 AGGCAGCGGGGTGTAGTGGAT CCATTACACTACCCTGCCTCT down 1 2


Secondary structure

NNNNCGCTCTCTCCATTACACTACCCTGCCTCTTCTCCACGAGAGGCAGCGGGGTGTAGTGGATAGAGCACGG
----------CTCCATTACACTACCCTGCCTCT 	1
----------CTCCATTACACTACCCTGCCTC 	6
-----------TCCATTACACTACCCTGCCTC 	8
-----------TCCATTACACTACCCTGCCTCT 	144
-------------CATTACACTACCCTGCCTCT 	2
------------------------------------------GAGGCAGCGGGGTGTAGTGGAT 	3
-------------------------------------------AGGCAGCGGGGTGTAGTGG 	3
-------------------------------------------AGGCAGCGGGGTGTAGTGGATA 	309
-------------------------------------------AGGCAGCGGGGTGTAGTGGAT 	362
-------------------------------------------AGGCAGCGGGGTGTAGTGGA 	33
--------------------------------------------GGCAGCGGGGTGTAGTGGATA 	1
--------------------------------------------GGCAGCGGGGTGTAGTGGAT 	1
--------------------------------------------GGCAGCGGGGTGTAGTGGATAGA 	1
--------------------------------------------GGCAGCGGGGTGTAGTGGATAG 	5



HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Sus scrofa GSM636846 AGGCAGCGGGGTGTAGTGGAT CCATTACACTACCCTGCCTCT down 1 2


Secondary structure

NNNNCGCTCTCTCCATTACACTACCCTGCCTCTTCTCCACGAGAGGCAGCGGGGTGTAGTGGATAGAGCACGG
----------CTCCATTACACTACCCTGCCTC 	3
-----------TCCATTACACTACCCTGCCTC 	1
-----------TCCATTACACTACCCTGCCT 	1
-----------TCCATTACACTACCCTGCCTCT 	24
------------------------------------------GAGGCAGCGGGGTGTAGTGGATA 	2
------------------------------------------GAGGCAGCGGGGTGTAGTGGA 	1
------------------------------------------GAGGCAGCGGGGTGTAGTGGAT 	2
-------------------------------------------AGGCAGCGGGGTGTAGTGGATA 	303
-------------------------------------------AGGCAGCGGGGTGTAGTGG 	4
-------------------------------------------AGGCAGCGGGGTGTAGTGGATAG 	1
-------------------------------------------AGGCAGCGGGGTGTAGTGGAT 	369
-------------------------------------------AGGCAGCGGGGTGTAGTGGA 	37
--------------------------------------------GGCAGCGGGGTGTAGTGGATAG 	1



HuntMi prediction: not a miRNA