miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: AGGCAGTGTAGTTAGCTAGTTG

selected species: Ciona intestinalis



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343283-14443 AGGCAGTGTAGTTAGCTAGTTG ACTGCTTTTTGCACTACCACG up 4 1


Secondary structure

CGATCTTTTCACGTGATTCTGAGGCAGTGTAGTTAGCTAGTTGTTTTCTTGCCGAGATGGACTTGCATCCCGAACGGTTTATTTCGAACAACTGCTTTTTGCACTACCACGGAAATCACTTGACTGTTC
---------------------AGGCAGTGTAGTTAGCTAGTTGT 	18
---------------------AGGCAGTGTAGTTAGCTAGTTG 	48
---------------------AGGCAGTGTAGTTAGCTAGTT 	7
---------------------AGGCAGTGTAGTTAGCTAGT 	1
-----------------------------------------------------------------------------------------AACTGCTTTTTGCACTACC 	1

Overlaps with: MNEST024816
Overlaps with miRBase pre-miRNAs: cin-mir-34
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343282-14442 AGGCAGTGTAGTTAGCTAGTTG ACTGCTTTTTGCACTACCACG up 4 1


Secondary structure

CGATCTTTTCACGTGATTCTGAGGCAGTGTAGTTAGCTAGTTGTTTTCTTGCCGAGATGGACTTGCATCCCGAACGGTTTATTTCGAACAACTGCTTTTTGCACTACCACGGAAATCACTTGACTGTTC
---------------------AGGCAGTGTAGTTAGCTAGTTG 	9
---------------------AGGCAGTGTAGTTAGCTAGTT 	2

Overlaps with: MNEST024816
Overlaps with miRBase pre-miRNAs: cin-mir-34
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Ciona intestinalis GSM343284-14444 AGGCAGTGTAGTTAGCTAGTTG ACTGCTTTTTGCACTACCACG up 4 1


Secondary structure

CGATCTTTTCACGTGATTCTGAGGCAGTGTAGTTAGCTAGTTGTTTTCTTGCCGAGATGGACTTGCATCCCGAACGGTTTATTTCGAACAACTGCTTTTTGCACTACCACGGAAATCACTTGACTGTTC
---------------------AGGCAGTGTAGTTAGCTAGTTGT 	80
---------------------AGGCAGTGTAGTTAGCTAGTTG 	310
---------------------AGGCAGTGTAGTTAGCTAGTT 	6
---------------------AGGCAGTGTAGTTAGCTAGT 	2
---------------------AGGCAGTGTAGTTAGCTAG 	12
----------------------GGCAGTGTAGTTAGCTAGTTGT 	1
------------------------CAGTGTAGTTAGCTAGTTGT 	1

Overlaps with: MNEST024816
Overlaps with miRBase pre-miRNAs: cin-mir-34
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Ciona intestinalis GSM343285 AGGCAGTGTAGTTAGCTAGTTG ACTGCTTTTTGCACTACCACG up 4 1


Secondary structure

CGATCTTTTCACGTGATTCTGAGGCAGTGTAGTTAGCTAGTTGTTTTCTTGCCGAGATGGACTTGCATCCCGAACGGTTTATTTCGAACAACTGCTTTTTGCACTACCACGGAAATCACTTGACTGTTC
------------------CTGAGGCAGTGTAGTTAGCT 	1
---------------------AGGCAGTGTAGTTAGCTAGTTGT 	762
---------------------AGGCAGTGTAGTTAGCTAGTTG 	3605
---------------------AGGCAGTGTAGTTAGCTAGTT 	77
---------------------AGGCAGTGTAGTTAGCTAGT 	167
---------------------AGGCAGTGTAGTTAGCTAG 	62
----------------------GGCAGTGTAGTTAGCTAGTTG 	1
-----------------------------------------------------------------------------------------AACTGCTTTTTGCACTACCACG 	1

Overlaps with: MNEST024816
Overlaps with miRBase pre-miRNAs: cin-mir-34
HuntMi prediction: true miRNA