miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AGGGAATAGTTGCTGTGCTGTA

selected species: Drosophila melanogaster



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM286605-9793 AGGGAATAGTTGCTGTGCTGTA TATCACAGTGGCTGTTCTTTTT up 1 0


Secondary structure

TAATCACAGCCTTTAATGTAGAGGGAATAGTTGCTGTGCTGTAAGTTAATATACCATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGCCTAAC
---------------------AGGGAATAGTTGCTGTGCTGTA 	3080
---------------------AGGGAATAGTTGCTGTGCTGT 	190
---------------------AGGGAATAGTTGCTGTGCTGTAA 	29
---------------------AGGGAATAGTTGCTGTGCTGTAAG 	2
---------------------AGGGAATAGTTGCTGTGCTG 	81
---------------------AGGGAATAGTTGCTGTGCT 	15
----------------------GGGAATAGTTGCTGTGCTGTA 	254
----------------------GGGAATAGTTGCTGTGCTGTAAG 	2
----------------------GGGAATAGTTGCTGTGCTGT 	8
----------------------GGGAATAGTTGCTGTGCTG 	6
-----------------------GGAATAGTTGCTGTGCTGTA 	8
------------------------GAATAGTTGCTGTGCTGTA 	1
-------------------------------------------AGTTAATATACCATATCTA 	22
--------------------------------------------------------------TATCACAGTGGCTGTTCTTTTT 	5


Overlaps with: MNEST036337 MNEST036338
Overlaps with miRBase pre-miRNAs: dme-mir-6-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM322543-14323 AGGGAATAGTTGCTGTGCTGTA TATCACAGTGGCTGTTCTTTTT up 1 0


Secondary structure

TAATCACAGCCTTTAATGTAGAGGGAATAGTTGCTGTGCTGTAAGTTAATATACCATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGCCTAAC
---------------------AGGGAATAGTTGCTGTGCTGT 	10
---------------------AGGGAATAGTTGCTGTGCTGTA 	120
----------------------GGGAATAGTTGCTGTGCTGTA 	2


Overlaps with: MNEST036337 MNEST036338
Overlaps with miRBase pre-miRNAs: dme-mir-6-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM286604-9792 AGGGAATAGTTGCTGTGCTGTA TATCACAGTGGCTGTTCTTTTT up 1 0


Secondary structure

TAATCACAGCCTTTAATGTAGAGGGAATAGTTGCTGTGCTGTAAGTTAATATACCATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGCCTAAC
---------------------AGGGAATAGTTGCTGTGCTGTAA 	4
---------------------AGGGAATAGTTGCTGTGCTGTAAG 	3
---------------------AGGGAATAGTTGCTGTGCTGTA 	285
---------------------AGGGAATAGTTGCTGTGCTG 	14
---------------------AGGGAATAGTTGCTGTGCTGT 	46
---------------------AGGGAATAGTTGCTGTGCT 	2
----------------------GGGAATAGTTGCTGTGCTGTA 	51
----------------------GGGAATAGTTGCTGTGCTG 	3
----------------------GGGAATAGTTGCTGTGCTGT 	2
------------------------GAATAGTTGCTGTGCTGTA 	13
-------------------------------------------AGTTAATATACCATATCTA 	2


Overlaps with: MNEST036337 MNEST036338
Overlaps with miRBase pre-miRNAs: dme-mir-6-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM399110-16285 AGGGAATAGTTGCTGTGCTGTA TATCACAGTGGCTGTTCTTTTT up 1 0


Secondary structure

TAATCACAGCCTTTAATGTAGAGGGAATAGTTGCTGTGCTGTAAGTTAATATACCATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGCCTAAC
---------------------AGGGAATAGTTGCTGTGCTGTAA 	5
---------------------AGGGAATAGTTGCTGTGCTGTA 	417
---------------------AGGGAATAGTTGCTGTGCTG 	13
---------------------AGGGAATAGTTGCTGTGCTGT 	32
----------------------GGGAATAGTTGCTGTGCTGTA 	32
----------------------GGGAATAGTTGCTGTGCTGT 	3


Overlaps with: MNEST036337 MNEST036338
Overlaps with miRBase pre-miRNAs: dme-mir-6-1
HuntMi prediction: true miRNA