miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AGGGAATCGGGTGGAGTGCAT

selected species: Physcomitrella patens



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 AGGGAATCGGGTGGAGTGCAT ACACTCTCTCCGTTTCCCTTC down 3 0


Secondary structure

GAATGTCATCATACACTCTCTCCGTTTCCCTTCCGAATCGTTTTTCCCCTCATGCACTGGAAACTGTTGGAAGGGAATCGGGTGGAGTGCATCATGATCTG
------------ACACTCTCTCCGTTTCCCTTC 	15
------------ACACTCTCTCCGTTTCCCTT 	1
-----------------------------------------------------------------------AGGGAATCGGGTGGAGTGCAT 	25
-----------------------------------------------------------------------AGGGAATCGGGTGGAGTGCA 	4
------------------------------------------------------------------------GGGAATCGGGTGGAGTGCAT 	2

Overlaps with: MNEST039579 MNEST039580
Overlaps with miRBase pre-miRNAs: ppt-MIR1023e
HuntMi prediction: true miRNA