miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AGGGATAGGTAAAACAATGAC

selected species: Glycine max



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Glycine max GSM543396 AGGGATAGGTAAAACAATGAC TGTTGTTTTACCTATTCCACC up 1 0


Secondary structure

AACCATATGAAGGTGTTAACTCGTTCTCTATGTTGGATTTTATGGAACTGGAGGGATAGGTAAAACAATGACTGCTGTATAAGTAATTGTTATAGTTAGTTGTTGTTTTACCTATTCCACCCATTCCATGTATCCCTTTCCTGAGGGCGCGGTTAATTTCTTACTTTTC
------------------------------------------------TGGAGGGATAGGTAAAACAATGAC 	21
------------------------------------------------TGGAGGGATAGGTAAAACAATG 	51
------------------------------------------------TGGAGGGATAGGTAAAACAAT 	143
------------------------------------------------TGGAGGGATAGGTAAAACAA 	25
------------------------------------------------TGGAGGGATAGGTAAAACA 	27
---------------------------------------------------AGGGATAGGTAAAACAATGACTGC 	198
---------------------------------------------------AGGGATAGGTAAAACAATGACT 	326
---------------------------------------------------AGGGATAGGTAAAACAATGAC 	33799
---------------------------------------------------AGGGATAGGTAAAACAATGA 	3316
---------------------------------------------------AGGGATAGGTAAAACAATG 	696
----------------------------------------------------GGGATAGGTAAAACAATGACT 	47
----------------------------------------------------GGGATAGGTAAAACAATGAC 	55
---------------------------------------------------------------------------------------------------TTGTTGTTTTACCTATTCCAC 	18
----------------------------------------------------------------------------------------------------TGTTGTTTTACCTATTCCACC 	395
----------------------------------------------------------------------------------------------------TGTTGTTTTACCTATTCCAC 	68
----------------------------------------------------------------------------------------------------TGTTGTTTTACCTATTCCACCC 	15


Overlaps with: MNEST040489 MNEST040490 MNEST048592
Overlaps with miRBase pre-miRNAs: gso-MIR1510a gma-MIR1510a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Glycine max GSM852280 AGGGATAGGTAAAACAATGAC TGTTGTTTTACCTATTCCACC up 1 0


Secondary structure

AACCATATGAAGGTGTTAACTCGTTCTCTATGTTGGATTTTATGGAACTGGAGGGATAGGTAAAACAATGACTGCTGTATAAGTAATTGTTATAGTTAGTTGTTGTTTTACCTATTCCACCCATTCCATGTATCCCTTTCCTGAGGGCGCGGTTAATTTCTTACTTTTC
-----------------------------------------ATGGAACTGGAGGGATAGGTAAAA 	3
-----------------------------------------ATGGAACTGGAGGGATAGGTA 	1
------------------------------------------TGGAACTGGAGGGATAGGTAA 	3
------------------------------------------------TGGAGGGATAGGTAAAACAATGAC 	1011
------------------------------------------------TGGAGGGATAGGTAAAACAATG 	81
------------------------------------------------TGGAGGGATAGGTAAAACAAT 	24
------------------------------------------------TGGAGGGATAGGTAAAACAATGA 	9
------------------------------------------------TGGAGGGATAGGTAAAACA 	9
-------------------------------------------------GGAGGGATAGGTAAAACAATGAC 	1
-------------------------------------------------GGAGGGATAGGTAAAACAATG 	1
-------------------------------------------------GGAGGGATAGGTAAAACAATGAC 	1
-------------------------------------------------GGAGGGATAGGTAAAACAATG 	1
--------------------------------------------------GAGGGATAGGTAAAACAATGA 	4
--------------------------------------------------GAGGGATAGGTAAAACAATG 	1
---------------------------------------------------AGGGATAGGTAAAACAATGACTGC 	1346
---------------------------------------------------AGGGATAGGTAAAACAATGACT 	108
---------------------------------------------------AGGGATAGGTAAAACAATGAC 	46280
---------------------------------------------------AGGGATAGGTAAAACAATGA 	1652
---------------------------------------------------AGGGATAGGTAAAACAATG 	348
---------------------------------------------------AGGGATAGGTAAAACAATGACTG 	1
----------------------------------------------------GGGATAGGTAAAACAATGACT 	58
----------------------------------------------------GGGATAGGTAAAACAATGAC 	102
----------------------------------------------------GGGATAGGTAAAACAATGAC 	102
----------------------------------------------------GGGATAGGTAAAACAATGA 	6
----------------------------------------------------GGGATAGGTAAAACAATGA 	6
----------------------------------------------------GGGATAGGTAAAACAATGACTGC 	3
----------------------------------------------------GGGATAGGTAAAACAATGACTGC 	3
-----------------------------------------------------GGATAGGTAAAACAATGAC 	5
-----------------------------------------------------GGATAGGTAAAACAATGAC 	5
-------------------------------------------------------------------------------------------------AGTTGTTGTTTTACCTATTCCACC 	11
--------------------------------------------------------------------------------------------------GTTGTTGTTTTACCTATTCCACC 	2
---------------------------------------------------------------------------------------------------TTGTTGTTTTACCTATTCCAC 	6
----------------------------------------------------------------------------------------------------TGTTGTTTTACCTATTCCACCC 	113
----------------------------------------------------------------------------------------------------TGTTGTTTTACCTATTCCACC 	910
----------------------------------------------------------------------------------------------------TGTTGTTTTACCTATTCCAC 	31
----------------------------------------------------------------------------------------------------TGTTGTTTTACCTATTCCACCCAT 	3
----------------------------------------------------------------------------------------------------TGTTGTTTTACCTATTCCACCCA 	1
----------------------------------------------------------------------------------------------------TGTTGTTTTACCTATTCCA 	1
-----------------------------------------------------------------------------------------------------GTTGTTTTACCTATTCCACC 	1
-----------------------------------------------------------------------------------------------------GTTGTTTTACCTATTCCACC 	1
------------------------------------------------------------------------------------------------------TTGTTTTACCTATTCCACCCAT 	71
------------------------------------------------------------------------------------------------------TTGTTTTACCTATTCCACCCATT 	1
-------------------------------------------------------------------------------------------------------TGTTTTACCTATTCCACCCAT 	21
---------------------------------------------------------------------------------------------------------TTTTACCTATTCCACCCATT 	1


Overlaps with: MNEST040489 MNEST040490 MNEST048592
Overlaps with miRBase pre-miRNAs: gso-MIR1510a gma-MIR1510a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Glycine max GSM543394 AGGGATAGGTAAAACAATGAC TGTTGTTTTACCTATTCCACC up 1 0


Secondary structure

AACCATATGAAGGTGTTAACTCGTTCTCTATGTTGGATTTTATGGAACTGGAGGGATAGGTAAAACAATGACTGCTGTATAAGTAATTGTTATAGTTAGTTGTTGTTTTACCTATTCCACCCATTCCATGTATCCCTTTCCTGAGGGCGCGGTTAATTTCTTACTTTTC
------------------------------------------TGGAACTGGAGGGATAGGTAA 	6
------------------------------------------------TGGAGGGATAGGTAAAACAATG 	11
------------------------------------------------TGGAGGGATAGGTAAAACAAT 	34
------------------------------------------------TGGAGGGATAGGTAAAACAATGAC 	6
---------------------------------------------------AGGGATAGGTAAAACAATGACTGC 	31
---------------------------------------------------AGGGATAGGTAAAACAATGACT 	24
---------------------------------------------------AGGGATAGGTAAAACAATGAC 	2097
---------------------------------------------------AGGGATAGGTAAAACAATGA 	152
---------------------------------------------------AGGGATAGGTAAAACAATG 	35
---------------------------------------------------------------------------------------------------TTGTTGTTTTACCTATTCCAC 	5
----------------------------------------------------------------------------------------------------TGTTGTTTTACCTATTCCACC 	56


Overlaps with: MNEST040489 MNEST040490 MNEST048592
Overlaps with miRBase pre-miRNAs: gso-MIR1510a gma-MIR1510a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Glycine max GSM543395 AGGGATAGGTAAAACAATGAC TGTTGTTTTACCTATTCCACC up 1 0


Secondary structure

AACCATATGAAGGTGTTAACTCGTTCTCTATGTTGGATTTTATGGAACTGGAGGGATAGGTAAAACAATGACTGCTGTATAAGTAATTGTTATAGTTAGTTGTTGTTTTACCTATTCCACCCATTCCATGTATCCCTTTCCTGAGGGCGCGGTTAATTTCTTACTTTTC
------------------------------------------TGGAACTGGAGGGATAGGTAA 	7
------------------------------------------------TGGAGGGATAGGTAAAACAATGAC 	18
------------------------------------------------TGGAGGGATAGGTAAAACAATG 	10
------------------------------------------------TGGAGGGATAGGTAAAACAAT 	79
------------------------------------------------TGGAGGGATAGGTAAAACAA 	5
---------------------------------------------------AGGGATAGGTAAAACAATGACTGC 	69
---------------------------------------------------AGGGATAGGTAAAACAATGACT 	138
---------------------------------------------------AGGGATAGGTAAAACAATGAC 	7886
---------------------------------------------------AGGGATAGGTAAAACAATGA 	473
---------------------------------------------------AGGGATAGGTAAAACAATG 	55
----------------------------------------------------GGGATAGGTAAAACAATGAC 	6
---------------------------------------------------------------------------------------------------TTGTTGTTTTACCTATTCCAC 	31
----------------------------------------------------------------------------------------------------TGTTGTTTTACCTATTCCACCC 	71
----------------------------------------------------------------------------------------------------TGTTGTTTTACCTATTCCACC 	397
----------------------------------------------------------------------------------------------------TGTTGTTTTACCTATTCCAC 	65
------------------------------------------------------------------------------------------------------TTGTTTTACCTATTCCACCCAT 	32


Overlaps with: MNEST040489 MNEST040490 MNEST048592
Overlaps with miRBase pre-miRNAs: gso-MIR1510a gma-MIR1510a
HuntMi prediction: true miRNA