miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: AGGTCAGAGGTCGATCCTGG

selected species: Mus musculus



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527280 AGGTCAGAGGTCGATCCTGG AGGGTCACCCTCTGACTCTGT down 3 1


Secondary structure

CCCCTGGTGGGACATTCCCTGGGGCTGGGCCAAGGGTCACCCTCTGACTCTGTGGCCAAGGGTAGACAGGTCAGAGGTCGATCCTGGGCCTACTCTGGGGCTCCTCCCACTGGGAT
------------------------------CAAGGGTCACCCTCTGACTCTGT 	7
------------------------------CAAGGGTCACCCTCTGACTCTG 	8
------------------------------CAAGGGTCACCCTCTGACTCT 	4
-------------------------------AAGGGTCACCCTCTGACTCTG 	2
--------------------------------AGGGTCACCCTCTGACTCTGT 	1
-------------------------------------------------------------------AGGTCAGAGGTCGATCCTGGG 	7
-------------------------------------------------------------------AGGTCAGAGGTCGATCCTGG 	34
-------------------------------------------------------------------AGGTCAGAGGTCGATCCTGGGC 	26

Overlaps with: MNEST032203 MNEST032204
Overlaps with miRBase pre-miRNAs: rno-mir-540 mmu-mir-540
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527277-2110 AGGTCAGAGGTCGATCCTGG AGGGTCACCCTCTGACTCTGT down 3 1


Secondary structure

CCCCTGGTGGGACATTCCCTGGGGCTGGGCCAAGGGTCACCCTCTGACTCTGTGGCCAAGGGTAGACAGGTCAGAGGTCGATCCTGGGCCTACTCTGGGGCTCCTCCCACTGGGAT
------------------------------CAAGGGTCACCCTCTGACTCTGT 	29
------------------------------CAAGGGTCACCCTCTGACT 	1
------------------------------CAAGGGTCACCCTCTGACTCTG 	44
------------------------------CAAGGGTCACCCTCTGACTCT 	5
-------------------------------AAGGGTCACCCTCTGACTCTG 	8
--------------------------------AGGGTCACCCTCTGACTCTG 	2
------------------------------------------------------------------CAGGTCAGAGGTCGATCCTGGG 	1
-------------------------------------------------------------------AGGTCAGAGGTCGATCCTGGGC 	72
-------------------------------------------------------------------AGGTCAGAGGTCGATCCTG 	2
-------------------------------------------------------------------AGGTCAGAGGTCGATCCTGGG 	17
-------------------------------------------------------------------AGGTCAGAGGTCGATCCTGG 	144
--------------------------------------------------------------------GGTCAGAGGTCGATCCTGGGC 	3
--------------------------------------------------------------------GGTCAGAGGTCGATCCTGG 	1

Overlaps with: MNEST032203 MNEST032204
Overlaps with miRBase pre-miRNAs: rno-mir-540 mmu-mir-540
HuntMi prediction: true miRNA