miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: AGGTCCTCAATAAGTATTTGTT

selected species: Mus musculus



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527274-2107 AGGTCCTCAATAAGTATTTGTT CAAATCTTATTTGAGCACCTGT up 1 2


Secondary structure

TGGCATATAGCAGGTCCTCAATAAGTATTTGTTGAAAAAATAAATGAAGCAACAAATCTTATTTGAGCACCTGTTATGTGGA
-----------AGGTCCTCAATAAGTATTTGTT 	88
-----------AGGTCCTCAATAAGTATTTGT 	4
------------GGTCCTCAATAAGTATTTGT 	1
-------------GTCCTCAATAAGTATTTGTT 	1
---------------------------------------------------ACAAATCTTATTTGAGCACCTGT 	8
---------------------------------------------------ACAAATCTTATTTGAGCACCTG 	3
----------------------------------------------------CAAATCTTATTTGAGCACCTGT 	39
----------------------------------------------------CAAATCTTATTTGAGCACCTG 	3
----------------------------------------------------CAAATCTTATTTGAGCACCTGTT 	1
-----------------------------------------------------AAATCTTATTTGAGCACCTGT 	7
-----------------------------------------------------AAATCTTATTTGAGCACCTGTT 	1
------------------------------------------------------AATCTTATTTGAGCACCTGT 	1

Overlaps with: MNEST032400 MNEST032401
Overlaps with miRBase pre-miRNAs: mmu-mir-1264
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527280 AGGTCCTCAATAAGTATTTGTT CAAATCTTATTTGAGCACCTGT up 1 2


Secondary structure

TGGCATATAGCAGGTCCTCAATAAGTATTTGTTGAAAAAATAAATGAAGCAACAAATCTTATTTGAGCACCTGTTATGTGGA
-----------AGGTCCTCAATAAGTATTTGT 	2
-----------AGGTCCTCAATAAGTATTTG 	1
-----------AGGTCCTCAATAAGTATTTGTT 	14
---------------------------------------------------ACAAATCTTATTTGAGCACCTGT 	1
---------------------------------------------------ACAAATCTTATTTGAGCACCTG 	1
----------------------------------------------------CAAATCTTATTTGAGCACCTGT 	3

Overlaps with: MNEST032400 MNEST032401
Overlaps with miRBase pre-miRNAs: mmu-mir-1264
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM527276 AGGTCCTCAATAAGTATTTGTT CAAATCTTATTTGAGCACCTGT up 1 2


Secondary structure

TGGCATATAGCAGGTCCTCAATAAGTATTTGTTGAAAAAATAAATGAAGCAACAAATCTTATTTGAGCACCTGTTATGTGGA
-----------AGGTCCTCAATAAGTATTTGT 	10
-----------AGGTCCTCAATAAGTATTTGTT 	241
------------GGTCCTCAATAAGTATTTGTT 	5
-------------GTCCTCAATAAGTATTTGTT 	5
--------------TCCTCAATAAGTATTTGTT 	1
---------------------------------------------------ACAAATCTTATTTGAGCACCTGTT 	1
---------------------------------------------------ACAAATCTTATTTGAGCACCTGT 	30
---------------------------------------------------ACAAATCTTATTTGAGCACCTG 	2
---------------------------------------------------ACAAATCTTATTTGAGCACCT 	1
----------------------------------------------------CAAATCTTATTTGAGCACCTG 	1
----------------------------------------------------CAAATCTTATTTGAGCACCTGTT 	1
----------------------------------------------------CAAATCTTATTTGAGCACCTGT 	112
-----------------------------------------------------AAATCTTATTTGAGCACCTGT 	11

Overlaps with: MNEST032400 MNEST032401
Overlaps with miRBase pre-miRNAs: mmu-mir-1264
HuntMi prediction: true miRNA