miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AGGTGACTGCCTGGAATTGGG

selected species: Physcomitrella patens



7 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 AGGTGACTGCCTGGAATTGGG CAATTCCAGGCAAGCCCCTGT up 4 0


Secondary structure

TCACTAGCAAGAGCCATGCCTCTGCCCAGGCAGGTGACTGCCTGGAATTGGGCATAAATGCCCAATTGGACTCCCAAGTGCCCAATTCCAGGCAAGCCCCTGTCTGGGCAGGAGCATGATTTCTTCCAGTG
-------------------CTCTGCCCAGGCAGGTGACT 	1
-------------------CTCTGCCCAGGCAGGTGAC 	1
---------------------------AGGCAGGTGACTGCCTGGAAT 	1
---------------------------AGGCAGGTGACTGCCTGGAA 	1
-------------------------------AGGTGACTGCCTGGAATTGGGC 	1
-------------------------------AGGTGACTGCCTGGAATTGG 	4
-------------------------------AGGTGACTGCCTGGAATTGGG 	87
-------------------------------AGGTGACTGCCTGGAATTG 	1
--------------------------------GGTGACTGCCTGGAATTGGGC 	2
---------------------------------------------------------------------------------CCAATTCCAGGCAAGCCCCTG 	1
----------------------------------------------------------------------------------CAATTCCAGGCAAGCCCCTGT 	7
------------------------------------------------------------------------------------ATTCCAGGCAAGCCCCTGTCTGGG 	1
--------------------------------------------------------------------------------------TCCAGGCAAGCCCCTGTCTGG 	1
----------------------------------------------------------------------------------------CAGGCAAGCCCCTGTCTGGGC 	1
----------------------------------------------------------------------------------------------AGCCCCTGTCTGGGCAGGAGC 	1


Overlaps with: MNEST039607 MNEST051470
Overlaps with miRBase pre-miRNAs: ppt-MIR1032
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115095 AGGTGACTGCCTGGAATTGGG CAATTCCAGGCAAGCCCCTGT up 4 0


Secondary structure

TCACTAGCAAGAGCCATGCCTCTGCCCAGGCAGGTGACTGCCTGGAATTGGGCATAAATGCCCAATTGGACTCCCAAGTGCCCAATTCCAGGCAAGCCCCTGTCTGGGCAGGAGCATGATTTCTTCCAGTG
---------------------CTGCCCAGGCAGGTGACTGCC 	1
-------------------------------AGGTGACTGCCTGGAATTGG 	2
-------------------------------AGGTGACTGCCTGGAATTGGG 	16
--------------------------------------------------------------------------------------TCCAGGCAAGCCCCTGTCTGG 	1
--------------------------------------------------------------------------------------TCCAGGCAAGCCCCTGTCTG 	1
-----------------------------------------------------------------------------------------AGGCAAGCCCCTGTCTGGGC 	1


Overlaps with: MNEST039607 MNEST051470
Overlaps with miRBase pre-miRNAs: ppt-MIR1032
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM313215 AGGTGACTGCCTGGAATTGGG CAATTCCAGGCAAGCCCCTGT up 4 0


Secondary structure

TCACTAGCAAGAGCCATGCCTCTGCCCAGGCAGGTGACTGCCTGGAATTGGGCATAAATGCCCAATTGGACTCCCAAGTGCCCAATTCCAGGCAAGCCCCTGTCTGGGCAGGAGCATGATTTCTTCCAGTG
------------------CCTCTGCCCAGGCAGGTGACTG 	1
-------------------CTCTGCCCAGGCAGGTGACTG 	4
-------------------CTCTGCCCAGGCAGGTGACTGC 	10
---------------------------AGGCAGGTGACTGCCTGGAAT 	1
---------------------------AGGCAGGTGACTGCCTGGAA 	1
------------------------------CAGGTGACTGCCTGGAATTGG 	3
-------------------------------AGGTGACTGCCTGGAATTGGG 	97
-------------------------------AGGTGACTGCCTGGAATTGG 	4
-------------------------------AGGTGACTGCCTGGAATTG 	1
-------------------------------AGGTGACTGCCTGGAATTGGGC 	2
--------------------------------GGTGACTGCCTGGAATTGGGC 	4
----------------------------------------------------------------------------------CAATTCCAGGCAAGCCCCTGT 	12
-----------------------------------------------------------------------------------AATTCCAGGCAAGCCCCTGTC 	2
----------------------------------------------------------------------------------------CAGGCAAGCCCCTGTCTGGGC 	4
-----------------------------------------------------------------------------------------AGGCAAGCCCCTGTCTGGGCA 	3
----------------------------------------------------------------------------------------------AGCCCCTGTCTGGGCAGGAGC 	5


Overlaps with: MNEST039607 MNEST051470
Overlaps with miRBase pre-miRNAs: ppt-MIR1032
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM115096 AGGTGACTGCCTGGAATTGGG CAATTCCAGGCAAGCCCCTGT up 4 0


Secondary structure

TCACTAGCAAGAGCCATGCCTCTGCCCAGGCAGGTGACTGCCTGGAATTGGGCATAAATGCCCAATTGGACTCCCAAGTGCCCAATTCCAGGCAAGCCCCTGTCTGGGCAGGAGCATGATTTCTTCCAGTG
-------------------CTCTGCCCAGGCAGGTGACTG 	3
-------------------CTCTGCCCAGGCAGGTGACT 	1
---------------------------AGGCAGGTGACTGCCTGGAAT 	1
------------------------------CAGGTGACTGCCTGGAATTGG 	1
-------------------------------AGGTGACTGCCTGGAATTGG 	4
-------------------------------AGGTGACTGCCTGGAATTGGG 	71
----------------------------------------------------------------------------------CAATTCCAGGCAAGCCCCTGT 	1
-----------------------------------------------------------------------------------------AGGCAAGCCCCTGTCTGGGCA 	1
-----------------------------------------------------------------------------------------AGGCAAGCCCCTGTCTGGGC 	1


Overlaps with: MNEST039607 MNEST051470
Overlaps with miRBase pre-miRNAs: ppt-MIR1032
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM313216 AGGTGACTGCCTGGAATTGGG CAATTCCAGGCAAGCCCCTGT up 4 0


Secondary structure

TCACTAGCAAGAGCCATGCCTCTGCCCAGGCAGGTGACTGCCTGGAATTGGGCATAAATGCCCAATTGGACTCCCAAGTGCCCAATTCCAGGCAAGCCCCTGTCTGGGCAGGAGCATGATTTCTTCCAGTG
-------------------CTCTGCCCAGGCAGGTGACTGC 	3
-------------------CTCTGCCCAGGCAGGTGACTG 	4
------------------------------CAGGTGACTGCCTGGAATTGGG 	1
------------------------------CAGGTGACTGCCTGGAATTGG 	2
-------------------------------AGGTGACTGCCTGGAATTGGGC 	2
-------------------------------AGGTGACTGCCTGGAATTGGG 	323
-------------------------------AGGTGACTGCCTGGAATTGG 	11
--------------------------------GGTGACTGCCTGGAATTGGGC 	1
----------------------------------------------------------------------------------CAATTCCAGGCAAGCCCCTGT 	2
----------------------------------------------------------------------------------------CAGGCAAGCCCCTGTCTGGGC 	2
-----------------------------------------------------------------------------------------AGGCAAGCCCCTGTCTGGGC 	1
------------------------------------------------------------------------------------------GGCAAGCCCCTGTCTGGGCAG 	1
----------------------------------------------------------------------------------------------AGCCCCTGTCTGGGCAGGAGC 	77
----------------------------------------------------------------------------------------------AGCCCCTGTCTGGGCAGGAG 	1
-----------------------------------------------------------------------------------------------GCCCCTGTCTGGGCAGGAGC 	1


Overlaps with: MNEST039607 MNEST051470
Overlaps with miRBase pre-miRNAs: ppt-MIR1032
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM313214 AGGTGACTGCCTGGAATTGGG CAATTCCAGGCAAGCCCCTGT up 4 0


Secondary structure

TCACTAGCAAGAGCCATGCCTCTGCCCAGGCAGGTGACTGCCTGGAATTGGGCATAAATGCCCAATTGGACTCCCAAGTGCCCAATTCCAGGCAAGCCCCTGTCTGGGCAGGAGCATGATTTCTTCCAGTG
--------AAGAGCCATGCCTCTGCCC 	1
------------------CCTCTGCCCAGGCAGGTGACTG 	1
-------------------CTCTGCCCAGGCAGGTGACTGC 	6
-------------------CTCTGCCCAGGCAGGTGACTG 	4
-------------------CTCTGCCCAGGCAGGTGACT 	1
---------------------------AGGCAGGTGACTGCCTGGAA 	4
---------------------------AGGCAGGTGACTGCCTGGAAT 	1
---------------------------AGGCAGGTGACTGCCTGGAATT 	1
-------------------------------AGGTGACTGCCTGGAATTGGGC 	1
-------------------------------AGGTGACTGCCTGGAATTGGG 	168
-------------------------------AGGTGACTGCCTGGAATTGG 	8
--------------------------------GGTGACTGCCTGGAATTGGGC 	4
--------------------------------GGTGACTGCCTGGAATTGGGCA 	1
----------------------------------------------------------------------------------CAATTCCAGGCAAGCCCCTGTC 	1
----------------------------------------------------------------------------------CAATTCCAGGCAAGCCCCTGT 	8
-----------------------------------------------------------------------------------AATTCCAGGCAAGCCCCTG 	1
-----------------------------------------------------------------------------------AATTCCAGGCAAGCCCCTGT 	3
----------------------------------------------------------------------------------------CAGGCAAGCCCCTGTCTGGGC 	2
-----------------------------------------------------------------------------------------AGGCAAGCCCCTGTCTGGGC 	2
-----------------------------------------------------------------------------------------AGGCAAGCCCCTGTCTGGGCA 	5
---------------------------------------------------------------------------------------------AAGCCCCTGTCTGGGCAGGAGC 	1
----------------------------------------------------------------------------------------------AGCCCCTGTCTGGGCAGGAGC 	5
------------------------------------------------------------------------------------------------CCCCTGTCTGGGCAGGAGC 	1


Overlaps with: MNEST039607 MNEST051470
Overlaps with miRBase pre-miRNAs: ppt-MIR1032
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Physcomitrella patens GSM313217 AGGTGACTGCCTGGAATTGGG CAATTCCAGGCAAGCCCCTGT up 4 0


Secondary structure

TCACTAGCAAGAGCCATGCCTCTGCCCAGGCAGGTGACTGCCTGGAATTGGGCATAAATGCCCAATTGGACTCCCAAGTGCCCAATTCCAGGCAAGCCCCTGTCTGGGCAGGAGCATGATTTCTTCCAGTG
-------------------CTCTGCCCAGGCAGGTGACTG 	1
---------------------------AGGCAGGTGACTGCCTGGAATTGG 	1
-------------------------------AGGTGACTGCCTGGAATTGGGC 	2
-------------------------------AGGTGACTGCCTGGAATTGGG 	267
-------------------------------AGGTGACTGCCTGGAATTGG 	10
--------------------------------GGTGACTGCCTGGAATTGGGC 	1
----------------------------------------------------------------------------------CAATTCCAGGCAAGCCCCTGT 	2
----------------------------------------------------------------------------------------CAGGCAAGCCCCTGTCTGGGC 	3
-----------------------------------------------------------------------------------------AGGCAAGCCCCTGTCTGGGC 	1
---------------------------------------------------------------------------------------------AAGCCCCTGTCTGGGCAGGAGC 	2
----------------------------------------------------------------------------------------------AGCCCCTGTCTGGGCAGGAGC 	66
-----------------------------------------------------------------------------------------------GCCCCTGTCTGGGCAGGAGC 	1


Overlaps with: MNEST039607 MNEST051470
Overlaps with miRBase pre-miRNAs: ppt-MIR1032
HuntMi prediction: true miRNA