miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: AGGTGCAGAGGCAGATGCAAC

selected species: Oryza sativa

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Oryza sativa	GSM520638-18676	AGGTGCAGAGGCAGATGCAAC	TGCATTTGCACCTGCACCTAC	down	3	0

Secondary structure

ACATATATATAGCAAGTGATGTGTGATAGAGCTGCATTTGCACCTGCACCTACAGAGAGGAAGATGAAGCAGCAAGCTAGCAATACGTGCTTGATCGCTATACGCTAGCTTCTTGCACACAATGTTGTTCCTGGTCTCTTCCTGATCCCTAGGTGCAGAGGCAGATGCAACTATGTCATAGACTTCACATCCATCTTTAG
--------------------------------TGCATTTGCACCTGCACCTAC 	120
--------------------------------TGCATTTGCACCTGCACCT 	2
---------------------------------GCATTTGCACCTGCACCTAC 	1
----------------------------------CATTTGCACCTGCACCTACA 	2
----------------------------------CATTTGCACCTGCACCTAC 	1
-----------------------------------ATTTGCACCTGCACCTACAGA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------CCTAGGTGCAGAGGCAGATGCAAC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------CTAGGTGCAGAGGCAGATGCA 	20
-----------------------------------------------------------------------------------------------------------------------------------------------------TAGGTGCAGAGGCAGATGCA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------TAGGTGCAGAGGCAGATGCAAC 	3
------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGCAGAGGCAGATGCAACT 	2
------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGCAGAGGCAGATGCA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGCAGAGGCAGATGCAA 	3
------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGCAGAGGCAGATGCAAC 	245
-------------------------------------------------------------------------------------------------------------------------------------------------------GGTGCAGAGGCAGATGCAAC 	5

Overlaps with: MNEST049892
Overlaps with miRBase pre-miRNAs: osa-MIR530
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Oryza sativa	GSM520640-18679	AGGTGCAGAGGCAGATGCAAC	TGCATTTGCACCTGCACCTAC	down	3	0

Secondary structure

ACATATATATAGCAAGTGATGTGTGATAGAGCTGCATTTGCACCTGCACCTACAGAGAGGAAGATGAAGCAGCAAGCTAGCAATACGTGCTTGATCGCTATACGCTAGCTTCTTGCACACAATGTTGTTCCTGGTCTCTTCCTGATCCCTAGGTGCAGAGGCAGATGCAACTATGTCATAGACTTCACATCCATCTTTAG
--------------------------------TGCATTTGCACCTGCACCTACAGA 	1
--------------------------------TGCATTTGCACCTGCACCTAC 	24
---------------------------------GCATTTGCACCTGCACCTAC 	1
-----------------------------------ATTTGCACCTGCACCTACAGA 	1
----------------------------------------CACCTGCACCTACAGAGAGGA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------CCTAGGTGCAGAGGCAGATGCAAC 	5
----------------------------------------------------------------------------------------------------------------------------------------------------CTAGGTGCAGAGGCAGATGC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------CTAGGTGCAGAGGCAGATGCA 	7
----------------------------------------------------------------------------------------------------------------------------------------------------CTAGGTGCAGAGGCAGATGCAAC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGCAGAGGCAGATGCAACT 	5
------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGCAGAGGCAGATGCAA 	2
------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGCAGAGGCAGATGCAAC 	144
-------------------------------------------------------------------------------------------------------------------------------------------------------GGTGCAGAGGCAGATGCAAC 	3

Overlaps with: MNEST049892
Overlaps with miRBase pre-miRNAs: osa-MIR530
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Oryza sativa	GSM693279	AGGTGCAGAGGCAGATGCAAC	TGCATTTGCACCTGCACCTAC	down	3	0

Secondary structure

ACATATATATAGCAAGTGATGTGTGATAGAGCTGCATTTGCACCTGCACCTACAGAGAGGAAGATGAAGCAGCAAGCTAGCAATACGTGCTTGATCGCTATACGCTAGCTTCTTGCACACAATGTTGTTCCTGGTCTCTTCCTGATCCCTAGGTGCAGAGGCAGATGCAACTATGTCATAGACTTCACATCCATCTTTAG
--------------------------------TGCATTTGCACCTGCACCTAC 	12
--------------------------------TGCATTTGCACCTGCACCT 	1
---------------------------------GCATTTGCACCTGCACCTAC 	2
----------------------------------------------------------------------------------------------------------------------------------------------------CTAGGTGCAGAGGCAGATGCAAC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGCAGAGGCAGATGCAAC 	15
------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGCAGAGGCAGATGCAA 	1

Overlaps with: MNEST049892
Overlaps with miRBase pre-miRNAs: osa-MIR530
HuntMi prediction: true miRNA