miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: AGTACACGTTTCTGGTACTAAG

selected species: Drosophila melanogaster



10 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM399105-16286 AGTACACGTTTCTGGTACTAAG TGGTATCAGCAAAGTGTTATTTTTT down 4 3


Secondary structure

AGACATGATTTTCCCAAGTGCCTGGTATCAGCAAAGTGTTATTTTTTATGTTTATGTAAAGTACACGTTTCTGGTACTAAGTACTTCGAGAAAGTTACCT
----------------------TGGTATCAGCAAAGTGTTATTTT 	22
----------------------TGGTATCAGCAAAGTGTTATT 	2
----------------------TGGTATCAGCAAAGTGTTATTTTT 	1
----------------------TGGTATCAGCAAAGTGTTATTTTTTA 	1
----------------------TGGTATCAGCAAAGTGTTATTTTTT 	5
----------------------TGGTATCAGCAAAGTGTTATTT 	11
----------------------------------------------------------AAGTACACGTTTCTGGTACTAA 	3
----------------------------------------------------------AAGTACACGTTTCTGGTACTAAG 	1
-----------------------------------------------------------AGTACACGTTTCTGGTACTAAGT 	4
-----------------------------------------------------------AGTACACGTTTCTGGTACT 	9
-----------------------------------------------------------AGTACACGTTTCTGGTACTAA 	378
-----------------------------------------------------------AGTACACGTTTCTGGTACTA 	248
-----------------------------------------------------------AGTACACGTTTCTGGTACTAAGTA 	1
-----------------------------------------------------------AGTACACGTTTCTGGTACTAAG 	686
------------------------------------------------------------GTACACGTTTCTGGTACTAAG 	20
------------------------------------------------------------GTACACGTTTCTGGTACTAA 	3
------------------------------------------------------------GTACACGTTTCTGGTACTAAGT 	2
------------------------------------------------------------GTACACGTTTCTGGTACTA 	1
-------------------------------------------------------------TACACGTTTCTGGTACTAAG 	1

Overlaps with: MNEST036561 MNEST036562
Overlaps with miRBase pre-miRNAs: dme-mir-992
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM360262-14327 AGTACACGTTTCTGGTACTAAG TGGTATCAGCAAAGTGTTATTTTTT down 4 3


Secondary structure

AGACATGATTTTCCCAAGTGCCTGGTATCAGCAAAGTGTTATTTTTTATGTTTATGTAAAGTACACGTTTCTGGTACTAAGTACTTCGAGAAAGTTACCT
-----------------------------------------------------------AGTACACGTTTCTGGTACTAA 	14
-----------------------------------------------------------AGTACACGTTTCTGGTACTA 	13
-----------------------------------------------------------AGTACACGTTTCTGGTACTAAG 	66

Overlaps with: MNEST036561 MNEST036562
Overlaps with miRBase pre-miRNAs: dme-mir-992
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM286605-9793 AGTACACGTTTCTGGTACTAAG TGGTATCAGCAAAGTGTTATTTTTT down 4 3


Secondary structure

AGACATGATTTTCCCAAGTGCCTGGTATCAGCAAAGTGTTATTTTTTATGTTTATGTAAAGTACACGTTTCTGGTACTAAGTACTTCGAGAAAGTTACCT
------------CCCAAGTGCCTGGTATCAGCAA 	2
----------------------TGGTATCAGCAAAGTGTTATTTT 	2
----------------------TGGTATCAGCAAAGTGTTATTT 	1
-----------------------------------------------------------AGTACACGTTTCTGGTACTA 	3
-----------------------------------------------------------AGTACACGTTTCTGGTACTAA 	14
-----------------------------------------------------------AGTACACGTTTCTGGTACTAAG 	59

Overlaps with: MNEST036561 MNEST036562
Overlaps with miRBase pre-miRNAs: dme-mir-992
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM360260-14326 AGTACACGTTTCTGGTACTAAG TGGTATCAGCAAAGTGTTATTTTTT down 4 3


Secondary structure

AGACATGATTTTCCCAAGTGCCTGGTATCAGCAAAGTGTTATTTTTTATGTTTATGTAAAGTACACGTTTCTGGTACTAAGTACTTCGAGAAAGTTACCT
-----------------------------------------------------------AGTACACGTTTCTGGTACTAA 	10
-----------------------------------------------------------AGTACACGTTTCTGGTACTA 	11
-----------------------------------------------------------AGTACACGTTTCTGGTACTAAG 	32
------------------------------------------------------------GTACACGTTTCTGGTACTAA 	2
------------------------------------------------------------GTACACGTTTCTGGTACTA 	1

Overlaps with: MNEST036561 MNEST036562
Overlaps with miRBase pre-miRNAs: dme-mir-992
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Drosophila melanogaster GSM322543-14323 AGTACACGTTTCTGGTACTAAG TGGTATCAGCAAAGTGTTATTTTTT down 4 3


Secondary structure

AGACATGATTTTCCCAAGTGCCTGGTATCAGCAAAGTGTTATTTTTTATGTTTATGTAAAGTACACGTTTCTGGTACTAAGTACTTCGAGAAAGTTACCT
-----------------------------------------------------------AGTACACGTTTCTGGTACTAAG 	26
-----------------------------------------------------------AGTACACGTTTCTGGTACTAA 	14
-----------------------------------------------------------AGTACACGTTTCTGGTACTA 	3

Overlaps with: MNEST036561 MNEST036562
Overlaps with miRBase pre-miRNAs: dme-mir-992
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Drosophila melanogaster GSM286607-9796 AGTACACGTTTCTGGTACTAAG TGGTATCAGCAAAGTGTTATTTTTT down 4 3


Secondary structure

AGACATGATTTTCCCAAGTGCCTGGTATCAGCAAAGTGTTATTTTTTATGTTTATGTAAAGTACACGTTTCTGGTACTAAGTACTTCGAGAAAGTTACCT
-----------------------------------------------------------AGTACACGTTTCTGGTACTAA 	2
-----------------------------------------------------------AGTACACGTTTCTGGTACTAAG 	25

Overlaps with: MNEST036561 MNEST036562
Overlaps with miRBase pre-miRNAs: dme-mir-992
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Drosophila melanogaster GSM385744-16261 AGTACACGTTTCTGGTACTAAG TGGTATCAGCAAAGTGTTATTTTTT down 4 3


Secondary structure

AGACATGATTTTCCCAAGTGCCTGGTATCAGCAAAGTGTTATTTTTTATGTTTATGTAAAGTACACGTTTCTGGTACTAAGTACTTCGAGAAAGTTACCT
-----------------------------------------------------------AGTACACGTTTCTGGTACT 	1
-----------------------------------------------------------AGTACACGTTTCTGGTACTAAG 	5

Overlaps with: MNEST036561 MNEST036562
Overlaps with miRBase pre-miRNAs: dme-mir-992
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Drosophila melanogaster GSM322208-14317 AGTACACGTTTCTGGTACTAAG TGGTATCAGCAAAGTGTTATTTTTT down 4 3


Secondary structure

AGACATGATTTTCCCAAGTGCCTGGTATCAGCAAAGTGTTATTTTTTATGTTTATGTAAAGTACACGTTTCTGGTACTAAGTACTTCGAGAAAGTTACCT
-----------------------------------------------------------AGTACACGTTTCTGGTACTA 	5
-----------------------------------------------------------AGTACACGTTTCTGGTACTAA 	8
-----------------------------------------------------------AGTACACGTTTCTGGTACTAAG 	21
------------------------------------------------------------GTACACGTTTCTGGTACTAAG 	2

Overlaps with: MNEST036561 MNEST036562
Overlaps with miRBase pre-miRNAs: dme-mir-992
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Drosophila melanogaster GSM385748-16264 AGTACACGTTTCTGGTACTAAG TGGTATCAGCAAAGTGTTATTTTTT down 4 3


Secondary structure

AGACATGATTTTCCCAAGTGCCTGGTATCAGCAAAGTGTTATTTTTTATGTTTATGTAAAGTACACGTTTCTGGTACTAAGTACTTCGAGAAAGTTACCT
-----------------------------------------------------------AGTACACGTTTCTGGTACTAAG 	9
-----------------------------------------------------------AGTACACGTTTCTGGTACT 	2
-----------------------------------------------------------AGTACACGTTTCTGGTACTAA 	1

Overlaps with: MNEST036561 MNEST036562
Overlaps with miRBase pre-miRNAs: dme-mir-992
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Drosophila melanogaster GSM399110-16285 AGTACACGTTTCTGGTACTAAG TGGTATCAGCAAAGTGTTATTTTTT down 4 3


Secondary structure

AGACATGATTTTCCCAAGTGCCTGGTATCAGCAAAGTGTTATTTTTTATGTTTATGTAAAGTACACGTTTCTGGTACTAAGTACTTCGAGAAAGTTACCT
-----------------------------------------------------------AGTACACGTTTCTGGTACTA 	4
-----------------------------------------------------------AGTACACGTTTCTGGTACTAAG 	6

Overlaps with: MNEST036561 MNEST036562
Overlaps with miRBase pre-miRNAs: dme-mir-992
HuntMi prediction: true miRNA