miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AGTATTACATGGCCAATCTCC

selected species: Mus musculus



7 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527274-2107 AGTATTACATGGCCAATCTCC AGGTTGCCCATGGTGTGTTCA down 3 0


Secondary structure

TCGAAATCAAGTGTTCGAATGGAGGTTGCCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGCACTAAAATCTTC
---AAATCAAGTGTTCGAATGGA 	1
---AAATCAAGTGTTCGAATGG 	1
----------------------AGGTTGCCCATGGTGTGTTCAT 	1
----------------------AGGTTGCCCATGGTGTGTTCA 	3
----------------------AGGTTGCCCATGGTGTGTTCATT 	1
-----------------------GGTTGCCCATGGTGTGTTCA 	1
-----------------------GGTTGCCCATGGTGTGTTCATT 	1
-----------------------GGTTGCCCATGGTGTGTTCATTT 	1
-------------------------------------------------------TGAGTATTACATGGCCAATCT 	143
-------------------------------------------------------TGAGTATTACATGGCCAATCTCC 	44
-------------------------------------------------------TGAGTATTACATGGCCAATC 	7
-------------------------------------------------------TGAGTATTACATGGCCAATCTCCTTT 	1
-------------------------------------------------------TGAGTATTACATGGCCAATCTC 	276
-------------------------------------------------------TGAGTATTACATGGCCAAT 	2
--------------------------------------------------------GAGTATTACATGGCCAATCTCC 	3
--------------------------------------------------------GAGTATTACATGGCCAATCTC 	5
--------------------------------------------------------GAGTATTACATGGCCAATCT 	6
---------------------------------------------------------AGTATTACATGGCCAATCT 	52
---------------------------------------------------------AGTATTACATGGCCAATCTCC 	1233
---------------------------------------------------------AGTATTACATGGCCAATCTCCT 	19
---------------------------------------------------------AGTATTACATGGCCAATCTC 	125
----------------------------------------------------------GTATTACATGGCCAATCTCC 	7
----------------------------------------------------------GTATTACATGGCCAATCTC 	1
-----------------------------------------------------------TATTACATGGCCAATCTCC 	1

Overlaps with: MNEST032185
Overlaps with miRBase pre-miRNAs: mmu-mir-496a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527280 AGTATTACATGGCCAATCTCC AGGTTGCCCATGGTGTGTTCA down 3 0


Secondary structure

TCGAAATCAAGTGTTCGAATGGAGGTTGCCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGCACTAAAATCTTC
-----------------------GGTTGCCCATGGTGTGTTCATT 	2
-------------------------------------------------------TGAGTATTACATGGCCAATC 	6
-------------------------------------------------------TGAGTATTACATGGCCAATCT 	114
-------------------------------------------------------TGAGTATTACATGGCCAATCTCC 	22
-------------------------------------------------------TGAGTATTACATGGCCAATCTC 	202
--------------------------------------------------------GAGTATTACATGGCCAATCTCC 	2
--------------------------------------------------------GAGTATTACATGGCCAATCTC 	5
---------------------------------------------------------AGTATTACATGGCCAATCTC 	73
---------------------------------------------------------AGTATTACATGGCCAATCT 	27
---------------------------------------------------------AGTATTACATGGCCAATCTCCT 	4
---------------------------------------------------------AGTATTACATGGCCAATCTCC 	536
----------------------------------------------------------GTATTACATGGCCAATCTCC 	3
----------------------------------------------------------GTATTACATGGCCAATCTC 	1

Overlaps with: MNEST032185
Overlaps with miRBase pre-miRNAs: mmu-mir-496a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM527276 AGTATTACATGGCCAATCTCC AGGTTGCCCATGGTGTGTTCA down 3 0


Secondary structure

TCGAAATCAAGTGTTCGAATGGAGGTTGCCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGCACTAAAATCTTC
--GAAATCAAGTGTTCGAATGGA 	1
--GAAATCAAGTGTTCGAATGG 	1
---AAATCAAGTGTTCGAATGGA 	2
----------------------AGGTTGCCCATGGTGTGTTCA 	2
-----------------------GGTTGCCCATGGTGTGTTCATT 	1
-----------------------GGTTGCCCATGGTGTGTTC 	1
------------------------------------------------TTTATGATGAGTATTACATGGCC 	1
------------------------------------------------------ATGAGTATTACATGGCCAATCTC 	1
-------------------------------------------------------TGAGTATTACATGGCCAATC 	7
-------------------------------------------------------TGAGTATTACATGGCCAATCT 	189
-------------------------------------------------------TGAGTATTACATGGCCAATCTCC 	49
-------------------------------------------------------TGAGTATTACATGGCCAATCTC 	412
--------------------------------------------------------GAGTATTACATGGCCAATCTCC 	3
--------------------------------------------------------GAGTATTACATGGCCAATCTC 	7
--------------------------------------------------------GAGTATTACATGGCCAATCT 	3
---------------------------------------------------------AGTATTACATGGCCAATCTC 	126
---------------------------------------------------------AGTATTACATGGCCAATCT 	51
---------------------------------------------------------AGTATTACATGGCCAATCTCCT 	9
---------------------------------------------------------AGTATTACATGGCCAATCTCC 	1251
----------------------------------------------------------GTATTACATGGCCAATCTCC 	11
----------------------------------------------------------GTATTACATGGCCAATCTC 	1

Overlaps with: MNEST032185
Overlaps with miRBase pre-miRNAs: mmu-mir-496a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM527277-2110 AGTATTACATGGCCAATCTCC AGGTTGCCCATGGTGTGTTCA down 3 0


Secondary structure

TCGAAATCAAGTGTTCGAATGGAGGTTGCCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGCACTAAAATCTTC
--GAAATCAAGTGTTCGAATGGA 	1
---AAATCAAGTGTTCGAATGG 	1
----------------------AGGTTGCCCATGGTGTGTTC 	2
----------------------AGGTTGCCCATGGTGTGTTCA 	4
----------------------AGGTTGCCCATGGTGTGTTCATT 	1
-----------------------GGTTGCCCATGGTGTGTTCATT 	10
-----------------------GGTTGCCCATGGTGTGTTCA 	1
-----------------------GGTTGCCCATGGTGTGTTCATTT 	3
-------------------------------------------------------TGAGTATTACATGGCCAATCT 	357
-------------------------------------------------------TGAGTATTACATGGCCAATCTCC 	75
-------------------------------------------------------TGAGTATTACATGGCCAATC 	7
-------------------------------------------------------TGAGTATTACATGGCCAATCTC 	621
-------------------------------------------------------TGAGTATTACATGGCCAATCTCCT 	1
-------------------------------------------------------TGAGTATTACATGGCCAAT 	5
--------------------------------------------------------GAGTATTACATGGCCAATCTC 	33
--------------------------------------------------------GAGTATTACATGGCCAATCT 	8
--------------------------------------------------------GAGTATTACATGGCCAATCTCC 	9
---------------------------------------------------------AGTATTACATGGCCAATCT 	69
---------------------------------------------------------AGTATTACATGGCCAATCTCC 	1670
---------------------------------------------------------AGTATTACATGGCCAATCTCCTT 	1
---------------------------------------------------------AGTATTACATGGCCAATCTCCT 	16
---------------------------------------------------------AGTATTACATGGCCAATCTC 	221
----------------------------------------------------------GTATTACATGGCCAATCTCC 	10
----------------------------------------------------------GTATTACATGGCCAATCTC 	2
----------------------------------------------------------GTATTACATGGCCAATCTCCT 	1
-----------------------------------------------------------TATTACATGGCCAATCTCC 	4

Overlaps with: MNEST032185
Overlaps with miRBase pre-miRNAs: mmu-mir-496a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM539867 AGTATTACATGGCCAATCTCC AGGTTGCCCATGGTGTGTTCA down 3 0


Secondary structure

TCGAAATCAAGTGTTCGAATGGAGGTTGCCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGCACTAAAATCTTC
----------------------AGGTTGCCCATGGTGTGTTCAT 	1
----------------------AGGTTGCCCATGGTGTGTTCA 	3
----------------------AGGTTGCCCATGGTGTGTTCATTT 	1
----------------------AGGTTGCCCATGGTGTGTTCATT 	1
-----------------------GGTTGCCCATGGTGTGTTCATTT 	1
-----------------------GGTTGCCCATGGTGTGTTCATT 	3
-------------------------------------------------------TGAGTATTACATGGCCAATCTCC 	4
-------------------------------------------------------TGAGTATTACATGGCCAATC 	1
-------------------------------------------------------TGAGTATTACATGGCCAATCTC 	38
-------------------------------------------------------TGAGTATTACATGGCCAATCT 	15
--------------------------------------------------------GAGTATTACATGGCCAATCTCC 	1
---------------------------------------------------------AGTATTACATGGCCAATCTCCT 	6
---------------------------------------------------------AGTATTACATGGCCAATCTCC 	140
---------------------------------------------------------AGTATTACATGGCCAATCTC 	35
---------------------------------------------------------AGTATTACATGGCCAATCT 	1

Overlaps with: MNEST032185
Overlaps with miRBase pre-miRNAs: mmu-mir-496a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Mus musculus GSM539854 AGTATTACATGGCCAATCTCC AGGTTGCCCATGGTGTGTTCA down 3 0


Secondary structure

TCGAAATCAAGTGTTCGAATGGAGGTTGCCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGCACTAAAATCTTC
-------------------------------------------------------TGAGTATTACATGGCCAATCTC 	6
-------------------------------------------------------TGAGTATTACATGGCCAATCT 	1
---------------------------------------------------------AGTATTACATGGCCAATCTCC 	11
---------------------------------------------------------AGTATTACATGGCCAATCTC 	8
---------------------------------------------------------AGTATTACATGGCCAATCTCCT 	1
---------------------------------------------------------AGTATTACATGGCCAATCT 	1
----------------------------------------------------------GTATTACATGGCCAATCTCC 	1

Overlaps with: MNEST032185
Overlaps with miRBase pre-miRNAs: mmu-mir-496a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Mus musculus GSM527279-2112 AGTATTACATGGCCAATCTCC AGGTTGCCCATGGTGTGTTCA down 3 0


Secondary structure

TCGAAATCAAGTGTTCGAATGGAGGTTGCCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGCACTAAAATCTTC
---AAATCAAGTGTTCGAATGGA 	1
---AAATCAAGTGTTCGAATGG 	2
----AATCAAGTGTTCGAATGGA 	2
----------------------AGGTTGCCCATGGTGTGTTC 	6
----------------------AGGTTGCCCATGGTGTGTTCAT 	1
----------------------AGGTTGCCCATGGTGTGTTCA 	5
-----------------------GGTTGCCCATGGTGTGTTCATT 	2
-------------------------------------------------------TGAGTATTACATGGCCAATCT 	434
-------------------------------------------------------TGAGTATTACATGGCCAATCTCC 	109
-------------------------------------------------------TGAGTATTACATGGCCAATC 	13
-------------------------------------------------------TGAGTATTACATGGCCAATCTCCTTT 	1
-------------------------------------------------------TGAGTATTACATGGCCAATCTC 	877
-------------------------------------------------------TGAGTATTACATGGCCAAT 	1
--------------------------------------------------------GAGTATTACATGGCCAATCTCC 	8
--------------------------------------------------------GAGTATTACATGGCCAATCTC 	10
--------------------------------------------------------GAGTATTACATGGCCAATCT 	2
---------------------------------------------------------AGTATTACATGGCCAATCT 	84
---------------------------------------------------------AGTATTACATGGCCAATCTCC 	2909
---------------------------------------------------------AGTATTACATGGCCAATCTCCTT 	1
---------------------------------------------------------AGTATTACATGGCCAATCTCCT 	14
---------------------------------------------------------AGTATTACATGGCCAATCTC 	359
----------------------------------------------------------GTATTACATGGCCAATCTCC 	13
----------------------------------------------------------GTATTACATGGCCAATCTC 	4
-----------------------------------------------------------TATTACATGGCCAATCTCC 	1

Overlaps with: MNEST032185
Overlaps with miRBase pre-miRNAs: mmu-mir-496a
HuntMi prediction: true miRNA