miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AGTCAGGATTACGGTTAGTTTT

selected species: Ciona intestinalis



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343283-14443 AGTCAGGATTACGGTTAGTTTT AACAACCGGTAACCCTGTCCGG up 4 2


Secondary structure

GGACAACTGTAAGTCAGGATTACGGTTAGTTTTTAAACTAAAACAACCGGTAACCCTGTCCGGCAGTTTAC
-----------AGTCAGGATTACGGTTAGTTTT 	6

Overlaps with: MNEST025088 MNEST025089
Overlaps with miRBase pre-miRNAs: cin-mir-4064
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343282-14442 AGTCAGGATTACGGTTAGTTTT AACAACCGGTAACCCTGTCCGG up 4 2


Secondary structure

GGACAACTGTAAGTCAGGATTACGGTTAGTTTTTAAACTAAAACAACCGGTAACCCTGTCCGGCAGTTTAC
-----------AGTCAGGATTACGGTTAGTTTT 	7
-----------AGTCAGGATTACGGTTAGTTT 	2

Overlaps with: MNEST025088 MNEST025089
Overlaps with miRBase pre-miRNAs: cin-mir-4064
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Ciona intestinalis GSM343285 AGTCAGGATTACGGTTAGTTTT AACAACCGGTAACCCTGTCCGG up 4 2


Secondary structure

GGACAACTGTAAGTCAGGATTACGGTTAGTTTTTAAACTAAAACAACCGGTAACCCTGTCCGGCAGTTTAC
----------AAGTCAGGATTACGGTTAGTTTT 	1
-----------AGTCAGGATTACGGTTAGTTTTT 	12
-----------AGTCAGGATTACGGTTAGTTTT 	978
-----------AGTCAGGATTACGGTTAGTTT 	36
-----------AGTCAGGATTACGGTTAGTT 	66
-----------AGTCAGGATTACGGTTAGT 	8
-------------TCAGGATTACGGTTAGTTTT 	1

Overlaps with: MNEST025088 MNEST025089
Overlaps with miRBase pre-miRNAs: cin-mir-4064
HuntMi prediction: true miRNA