miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: AGTGGGGAACCCTTCCATGAGG

selected species: Mus musculus



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527274-2107 AGTGGGGAACCCTTCCATGAGG TTATGCAAGATTCCCTTCTAC up 3 1


Secondary structure

ATGCCTGCTGTGGGAATTGACTTAGCTGGGAAGTGGGGAACCCTTCCATGAGGAGTAGAACACTCCTTATGCAAGATTCCCTTCTACCTGACTGAGTTGAAGTCATATCCTGCTC
-------------------------------AGTGGGGAACCCTTCCATGA 	1
-------------------------------AGTGGGGAACCCTTCCATGAGGA 	2
-------------------------------AGTGGGGAACCCTTCCATG 	2
-------------------------------AGTGGGGAACCCTTCCATGAG 	9
-------------------------------AGTGGGGAACCCTTCCATGAGG 	47
-------------------------------AGTGGGGAACCCTTCCATGAGGAG 	1
--------------------------------GTGGGGAACCCTTCCATGAGG 	2
---------------------------------TGGGGAACCCTTCCATGAGGAGT 	1
-----------------------------------------------------------------CTTATGCAAGATTCCCTTCTAC 	25
-----------------------------------------------------------------CTTATGCAAGATTCCCTTCTA 	2
-----------------------------------------------------------------CTTATGCAAGATTCCCTTCT 	2
------------------------------------------------------------------TTATGCAAGATTCCCTTCTAC 	2

Overlaps with: MNEST032181
Overlaps with miRBase pre-miRNAs: cfa-mir-491 mmu-mir-491
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527280 AGTGGGGAACCCTTCCATGAGG TTATGCAAGATTCCCTTCTAC up 3 1


Secondary structure

ATGCCTGCTGTGGGAATTGACTTAGCTGGGAAGTGGGGAACCCTTCCATGAGGAGTAGAACACTCCTTATGCAAGATTCCCTTCTACCTGACTGAGTTGAAGTCATATCCTGCTC
-------------------------------AGTGGGGAACCCTTCCATGAGG 	12
-------------------------------AGTGGGGAACCCTTCCATGA 	1
-------------------------------AGTGGGGAACCCTTCCATGAGGA 	2
-------------------------------AGTGGGGAACCCTTCCATG 	2
-----------------------------------------------------------------CTTATGCAAGATTCCCTTCTAC 	5
------------------------------------------------------------------TTATGCAAGATTCCCTTCTAC 	1

Overlaps with: MNEST032181
Overlaps with miRBase pre-miRNAs: cfa-mir-491 mmu-mir-491
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM527276 AGTGGGGAACCCTTCCATGAGG TTATGCAAGATTCCCTTCTAC up 3 1


Secondary structure

ATGCCTGCTGTGGGAATTGACTTAGCTGGGAAGTGGGGAACCCTTCCATGAGGAGTAGAACACTCCTTATGCAAGATTCCCTTCTACCTGACTGAGTTGAAGTCATATCCTGCTC
-------------------------------AGTGGGGAACCCTTCCATGAGG 	37
-------------------------------AGTGGGGAACCCTTCCATGAG 	3
-------------------------------AGTGGGGAACCCTTCCATGAGGA 	1
-------------------------------AGTGGGGAACCCTTCCATG 	2
---------------------------------TGGGGAACCCTTCCATGAGGAGT 	1
-----------------------------------------------------------------CTTATGCAAGATTCCCTTCT 	4
-----------------------------------------------------------------CTTATGCAAGATTCCCTTCTAC 	17
------------------------------------------------------------------TTATGCAAGATTCCCTTCTACCT 	1
------------------------------------------------------------------TTATGCAAGATTCCCTTCTAC 	4

Overlaps with: MNEST032181
Overlaps with miRBase pre-miRNAs: cfa-mir-491 mmu-mir-491
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM527277-2110 AGTGGGGAACCCTTCCATGAGG TTATGCAAGATTCCCTTCTAC up 3 1


Secondary structure

ATGCCTGCTGTGGGAATTGACTTAGCTGGGAAGTGGGGAACCCTTCCATGAGGAGTAGAACACTCCTTATGCAAGATTCCCTTCTACCTGACTGAGTTGAAGTCATATCCTGCTC
-------------------------------AGTGGGGAACCCTTCCATGAGGA 	2
-------------------------------AGTGGGGAACCCTTCCATGAG 	6
-------------------------------AGTGGGGAACCCTTCCATGAGG 	50
-------------------------------AGTGGGGAACCCTTCCATGA 	1
--------------------------------GTGGGGAACCCTTCCATGAGG 	1
---------------------------------TGGGGAACCCTTCCATGAGGAGT 	1
-----------------------------------------------------------------CTTATGCAAGATTCCCTTCTAC 	11
-----------------------------------------------------------------CTTATGCAAGATTCCCTTCTA 	1
-----------------------------------------------------------------CTTATGCAAGATTCCCTTCT 	3
------------------------------------------------------------------TTATGCAAGATTCCCTTCTAC 	2

Overlaps with: MNEST032181
Overlaps with miRBase pre-miRNAs: cfa-mir-491 mmu-mir-491
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM527279-2112 AGTGGGGAACCCTTCCATGAGG TTATGCAAGATTCCCTTCTAC up 3 1


Secondary structure

ATGCCTGCTGTGGGAATTGACTTAGCTGGGAAGTGGGGAACCCTTCCATGAGGAGTAGAACACTCCTTATGCAAGATTCCCTTCTACCTGACTGAGTTGAAGTCATATCCTGCTC
-------------------------------AGTGGGGAACCCTTCCATGA 	3
-------------------------------AGTGGGGAACCCTTCCATG 	2
-------------------------------AGTGGGGAACCCTTCCATGAGGA 	2
-------------------------------AGTGGGGAACCCTTCCATGAG 	2
-------------------------------AGTGGGGAACCCTTCCATGAGG 	50
-------------------------------AGTGGGGAACCCTTCCATGAGGAG 	1
--------------------------------GTGGGGAACCCTTCCATGAGG 	1
---------------------------------TGGGGAACCCTTCCATGAGGAGT 	1
-----------------------------------------------------------------CTTATGCAAGATTCCCTTCTAC 	23
-----------------------------------------------------------------CTTATGCAAGATTCCCTTCTA 	3
-----------------------------------------------------------------CTTATGCAAGATTCCCTTCT 	2
------------------------------------------------------------------TTATGCAAGATTCCCTTCTAC 	3
------------------------------------------------------------------TTATGCAAGATTCCCTTCT 	1

Overlaps with: MNEST032181
Overlaps with miRBase pre-miRNAs: cfa-mir-491 mmu-mir-491
HuntMi prediction: true miRNA