miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: AGTGGTGTGCGTGTGTGCCTCG

selected species: Drosophila melanogaster



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM322543-14323 AGTGGTGTGCGTGTGTGCCTCG CGGCACACTCGCACACACACACG down 3 1


Secondary structure

GCCGCCATCTTGCGGCACACTCGCACACACACACGTGTGCCATTCTGGTTTTGCAGTGGTGTGCGTGTGTGCCTCGAGTCGTTGC
------------CGGCACACTCGCACACACACAC 	1
------------CGGCACACTCGCACACACACACG 	2
------------CGGCACACTCGCACACACACA 	3
-----------------------------------TGTGCCATTCTGGTTTTGCAGTG 	2
-----------------------------------------------------CAGTGGTGTGCGTGTGTGCCTCG 	1
------------------------------------------------------AGTGGTGTGCGTGTGTGCCT 	2
------------------------------------------------------AGTGGTGTGCGTGTGTGCCTC 	1
------------------------------------------------------AGTGGTGTGCGTGTGTGCCTCG 	7

Overlaps with: MNEST036678 MNEST036679
Overlaps with miRBase pre-miRNAs: dme-mir-4949
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM399110-16285 AGTGGTGTGCGTGTGTGCCTCG CGGCACACTCGCACACACACACG down 3 1


Secondary structure

GCCGCCATCTTGCGGCACACTCGCACACACACACGTGTGCCATTCTGGTTTTGCAGTGGTGTGCGTGTGTGCCTCGAGTCGTTGC
------------CGGCACACTCGCACACACACACGT 	2
------------CGGCACACTCGCACACACACACG 	3
-----------------------------------------------------CAGTGGTGTGCGTGTGTGCCTCG 	2
------------------------------------------------------AGTGGTGTGCGTGTGTGCCTCG 	8

Overlaps with: MNEST036678 MNEST036679
Overlaps with miRBase pre-miRNAs: dme-mir-4949
HuntMi prediction: true miRNA