miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: ATAAAAGTATGCCGAACTCG

selected species: Drosophila melanogaster

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Drosophila melanogaster	GSM371638-15389	ATAAAAGTATGCCGAACTCG	AGTTTCGTACACTTAATTA	down	3	1

Secondary structure

AACGGACCGAAGCCCACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGATCACCAAAGAG
-----------------------------GTGAGTTTCGTACACTTAAT 	1
-------------------------------------------------------------------ATAAAAGTATGCCGAACTCGC 	23
-------------------------------------------------------------------ATAAAAGTATGCCGAACTC 	2
-------------------------------------------------------------------ATAAAAGTATGCCGAACTCGCAG 	8
-------------------------------------------------------------------ATAAAAGTATGCCGAACTCG 	54
--------------------------------------------------------------------TAAAAGTATGCCGAACTCGCAG 	3
--------------------------------------------------------------------TAAAAGTATGCCGAACTCGC 	2
--------------------------------------------------------------------TAAAAGTATGCCGAACTCGCA 	1
---------------------------------------------------------------------AAAAGTATGCCGAACTCGCAG 	1

Overlaps with: MNEST036598
Overlaps with miRBase pre-miRNAs: dme-mir-1013
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Drosophila melanogaster	GSM399100-5263	ATAAAAGTATGCCGAACTCGC	GAGTTTCGTACACTTAATTA	down	3	1

Secondary structure

GAACGGACCGAAGCCCACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGATCACCAAAGAGT
------------------------------GTGAGTTTCGTACACTTAAT 	1
------------------------------GTGAGTTTCGTACACTTAATT 	2
--------------------------------------------------------------------ATAAAAGTATGCCGAACTCGCA 	6
--------------------------------------------------------------------ATAAAAGTATGCCGAACTCGC 	138
--------------------------------------------------------------------ATAAAAGTATGCCGAACTCG 	47
--------------------------------------------------------------------ATAAAAGTATGCCGAACTCGCAG 	19
---------------------------------------------------------------------TAAAAGTATGCCGAACTCGCAG 	26
---------------------------------------------------------------------TAAAAGTATGCCGAACTCGC 	4
---------------------------------------------------------------------TAAAAGTATGCCGAACTCGCA 	13
---------------------------------------------------------------------TAAAAGTATGCCGAACTCG 	1
----------------------------------------------------------------------AAAAGTATGCCGAACTCGCAG 	4

Overlaps with: MNEST036598
Overlaps with miRBase pre-miRNAs: dme-mir-1013
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Drosophila melanogaster	GSM399110-16285	ATAAAAGTATGCCGAACTCGC	GAGTTTCGTACACTTAATTA	down	3	1

Secondary structure

GAACGGACCGAAGCCCACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGATCACCAAAGAGT
--------------------------------------------------------------------ATAAAAGTATGCCGAACTCGC 	12
--------------------------------------------------------------------ATAAAAGTATGCCGAACTCG 	9

Overlaps with: MNEST036598
Overlaps with miRBase pre-miRNAs: dme-mir-1013
HuntMi prediction: true miRNA