miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: ATAAAGCTAGGTTACCAAAGCT

selected species: Caenorhabditis elegans



7 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427344-5691 ATAAAGCTAGGTTACCAAAGCT CTTTGGTGATTCAGCTTCAATGA down 3 1


Secondary structure

ACATTCTCCGATCTTTGGTGATTCAGCTTCAATGATTGGCTACAGGTTTCTTTCATAAAGCTAGGTTACCAAAGCTCGGCGTCTT
------------CTTTGGTGATTCAGCTTCAATG 	1
-----------------------------------TTGGCTACAGGTTTCTTTC 	12
------------------------------------------------------ATAAAGCTAGGTTACCAAAGCT 	67
------------------------------------------------------ATAAAGCTAGGTTACCAAAG 	3
------------------------------------------------------ATAAAGCTAGGTTACCAAAGC 	1
------------------------------------------------------ATAAAGCTAGGTTACCAAAGCTCG 	1
---------------------------------------------------------AAGCTAGGTTACCAAAGCT 	1

Overlaps with: MNEST038316
Overlaps with miRBase pre-miRNAs: cel-mir-79
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427332-5684 ATAAAGCTAGGTTACCAAAGCT CTTTGGTGATTCAGCTTCAATGA down 3 1


Secondary structure

ACATTCTCCGATCTTTGGTGATTCAGCTTCAATGATTGGCTACAGGTTTCTTTCATAAAGCTAGGTTACCAAAGCTCGGCGTCTT
------------CTTTGGTGATTCAGCTTCAATGA 	38
------------CTTTGGTGATTCAGCTTCAATG 	4
------------CTTTGGTGATTCAGCTTCAAT 	3
------------CTTTGGTGATTCAGCTTCAA 	3
-----------------------------------TTGGCTACAGGTTTCTTTC 	15
------------------------------------------------------ATAAAGCTAGGTTACCAAAGCT 	248
------------------------------------------------------ATAAAGCTAGGTTACCAAAGC 	9
------------------------------------------------------ATAAAGCTAGGTTACCAAAG 	5
------------------------------------------------------ATAAAGCTAGGTTACCAAA 	1
------------------------------------------------------ATAAAGCTAGGTTACCAAAGCTC 	1

Overlaps with: MNEST038316
Overlaps with miRBase pre-miRNAs: cel-mir-79
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM378784 ATAAAGCTAGGTTACCAAAGCT CTTTGGTGATTCAGCTTCAATGA down 3 1


Secondary structure

ACATTCTCCGATCTTTGGTGATTCAGCTTCAATGATTGGCTACAGGTTTCTTTCATAAAGCTAGGTTACCAAAGCTCGGCGTCTT
-----------TCTTTGGTGATTCAGCTTCAATG 	6
------------CTTTGGTGATTCAGCTTCAATGATT 	1
------------CTTTGGTGATTCAGCTTCAATG 	100
-------------TTTGGTGATTCAGCTTCAATGA 	3
-------------TTTGGTGATTCAGCTTCAATG 	2
-----------------------------------TTGGCTACAGGTTTCTTTC 	2
------------------------------------------------------ATAAAGCTAGGTTACCAAAGCTC 	1
------------------------------------------------------ATAAAGCTAGGTTACCAAAGCT 	813
------------------------------------------------------ATAAAGCTAGGTTACCAAAGC 	69
------------------------------------------------------ATAAAGCTAGGTTACCAAAG 	5
-------------------------------------------------------TAAAGCTAGGTTACCAAAGCT 	5

Overlaps with: MNEST038316
Overlaps with miRBase pre-miRNAs: cel-mir-79
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Caenorhabditis elegans GSM427346-5695 ATAAAGCTAGGTTACCAAAGCT CTTTGGTGATTCAGCTTCAATGA down 3 1


Secondary structure

ACATTCTCCGATCTTTGGTGATTCAGCTTCAATGATTGGCTACAGGTTTCTTTCATAAAGCTAGGTTACCAAAGCTCGGCGTCTT
-----------------------------------TTGGCTACAGGTTTCTTTC 	4
-----------------------------------------------------CATAAAGCTAGGTTACCAAAGCT 	1
------------------------------------------------------ATAAAGCTAGGTTACCAAAGCT 	410
------------------------------------------------------ATAAAGCTAGGTTACCAAAGC 	7
------------------------------------------------------ATAAAGCTAGGTTACCAAAG 	5
------------------------------------------------------ATAAAGCTAGGTTACCAAAGCTC 	1

Overlaps with: MNEST038316
Overlaps with miRBase pre-miRNAs: cel-mir-79
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Caenorhabditis elegans GSM427345-5693 ATAAAGCTAGGTTACCAAAGCT CTTTGGTGATTCAGCTTCAATGA down 3 1


Secondary structure

ACATTCTCCGATCTTTGGTGATTCAGCTTCAATGATTGGCTACAGGTTTCTTTCATAAAGCTAGGTTACCAAAGCTCGGCGTCTT
------------CTTTGGTGATTCAGCTTCAATGA 	2
------------CTTTGGTGATTCAGCTTCAATG 	2
-----------------------------------TTGGCTACAGGTTTCTTTC 	1
------------------------------------------------------ATAAAGCTAGGTTACCAAAGCT 	43
------------------------------------------------------ATAAAGCTAGGTTACCAAAG 	2

Overlaps with: MNEST038316
Overlaps with miRBase pre-miRNAs: cel-mir-79
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Caenorhabditis elegans GSM297751-9445 ATAAAGCTAGGTTACCAAAGCT CTTTGGTGATTCAGCTTCAATGA down 3 1


Secondary structure

ACATTCTCCGATCTTTGGTGATTCAGCTTCAATGATTGGCTACAGGTTTCTTTCATAAAGCTAGGTTACCAAAGCTCGGCGTCTT
-----------TCTTTGGTGATTCAGCTTCAATGA 	8
------------CTTTGGTGATTCAGCTTCAATGA 	54
------------CTTTGGTGATTCAGCTTCAATG 	3
-------------TTTGGTGATTCAGCTTCAATGA 	12
--------------TTGGTGATTCAGCTTCAATGA 	4
-----------------------------------------------------CATAAAGCTAGGTTACCAAAGCT 	10
------------------------------------------------------ATAAAGCTAGGTTACCAAA 	8
------------------------------------------------------ATAAAGCTAGGTTACCAAAGC 	94
------------------------------------------------------ATAAAGCTAGGTTACCAAAGCTC 	3
------------------------------------------------------ATAAAGCTAGGTTACCAAAGCT 	10169
------------------------------------------------------ATAAAGCTAGGTTACCAAAG 	58
-------------------------------------------------------TAAAGCTAGGTTACCAAAGCTC 	1
-------------------------------------------------------TAAAGCTAGGTTACCAAAGCT 	12
--------------------------------------------------------AAAGCTAGGTTACCAAAGCT 	17
---------------------------------------------------------AAGCTAGGTTACCAAAGCT 	17

Overlaps with: MNEST038316
Overlaps with miRBase pre-miRNAs: cel-mir-79
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Caenorhabditis elegans GSM297752-9446 ATAAAGCTAGGTTACCAAAGCT CTTTGGTGATTCAGCTTCAATGA down 3 1


Secondary structure

ACATTCTCCGATCTTTGGTGATTCAGCTTCAATGATTGGCTACAGGTTTCTTTCATAAAGCTAGGTTACCAAAGCTCGGCGTCTT
-----------TCTTTGGTGATTCAGCTTCAATGA 	8
------------CTTTGGTGATTCAGCTTCAATGAT 	2
------------CTTTGGTGATTCAGCTTCAA 	2
------------CTTTGGTGATTCAGCTTCAATGA 	118
------------CTTTGGTGATTCAGCTTCAATG 	4
-------------TTTGGTGATTCAGCTTCAATGA 	8
--------------TTGGTGATTCAGCTTCAATGA 	2
----------------------------------------------------TCATAAAGCTAGGTTACCAAAGCT 	1
-----------------------------------------------------CATAAAGCTAGGTTACCAAAGCT 	2
-----------------------------------------------------CATAAAGCTAGGTTACCAAAGC 	1
------------------------------------------------------ATAAAGCTAGGTTACCAAA 	18
------------------------------------------------------ATAAAGCTAGGTTACCAAAGCTCG 	2
------------------------------------------------------ATAAAGCTAGGTTACCAAAGC 	169
------------------------------------------------------ATAAAGCTAGGTTACCAAAGCT 	17525
------------------------------------------------------ATAAAGCTAGGTTACCAAAGCTC 	10
------------------------------------------------------ATAAAGCTAGGTTACCAAAG 	80
-------------------------------------------------------TAAAGCTAGGTTACCAAAGCTC 	1
-------------------------------------------------------TAAAGCTAGGTTACCAAAGCT 	32
--------------------------------------------------------AAAGCTAGGTTACCAAAGCT 	11
---------------------------------------------------------AAGCTAGGTTACCAAAGCT 	58

Overlaps with: MNEST038316
Overlaps with miRBase pre-miRNAs: cel-mir-79
HuntMi prediction: true miRNA