miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: ATACTAAGTACACTACGTTTTC

selected species: Danio rerio



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540646 ATACTAAGTACACTACGTTTTC AAATGTAGTTGACTATAAGTATAC down 3 2


Secondary structure

TGCACCTTTCAATTTCTTGAGGAAATGTAGTTGACTATAAGTATACTTATAGCAGACAATGTATACTAAGTACACTACGTTTTCTTAGGAGAAGTGAGATCCC
----------------------AAATGTAGTTGACTATAAGTATAC 	7
-----------------------AATGTAGTTGACTATAAGTATACT 	1
-------------------------------------------------------------TATACTAAGTACACTACGTTTT 	1
--------------------------------------------------------------ATACTAAGTACACTACGTTTT 	1
--------------------------------------------------------------ATACTAAGTACACTACGTTTTC 	24


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540646 ATACTAAGTACACTACGTTTTC AAATGTAGTAGACTATAAGTATAC down 3 2


Secondary structure

GAGTGTTTGGCATCTTCTGAGGAAATGTAGTAGACTATAAGTATACAGTGAACATGAACGTATACTAAGTACACTACGTTTTCTCAAGAGGTGGAATCTCAC
----------------------AAATGTAGTAGACTATAAGT 	1
----------------------AAATGTAGTAGACTATAAGTATAC 	3
----------------------AAATGTAGTAGACTATAAGTATA 	1
-----------------------AATGTAGTAGACTATAAGTATAC 	3
------------------------------------------------------------TATACTAAGTACACTACGTTTT 	1
-------------------------------------------------------------ATACTAAGTACACTACGTTTT 	1
-------------------------------------------------------------ATACTAAGTACACTACGTTTTC 	24

Overlaps with: MNEST034495
Overlaps with miRBase pre-miRNAs: dre-mir-728
HuntMi prediction: true miRNA