miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: ATAGCTCTTTGAATGGTACTGC

selected species: Danio rerio

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Danio rerio	GSM540644	ATAGCTCTTTGAATGGTACTGC	AGCGCCATTTACAGAGCTATAA	down	2	0

Secondary structure

AGGGTCGGGAAGAACTTGTGTGGTGCAGATAGCAGCGCCATTTACAGAGCTATAAGCATCATAGTTGTCATAGCTCTTTGAATGGTACTGCCATATGCACTGAACTATCGGCATCTCGCTC
-------------------------------------------------------------------TCATAGCTCTTTGAATGGTACTGC 	3
---------------------------------------------------------------------ATAGCTCTTTGAATGGTACTGC 	55
----------------------------------------------------------------------TAGCTCTTTGAATGGTACTGC 	8

Overlaps with: MNEST034481
Overlaps with miRBase pre-miRNAs: dre-mir-458
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Danio rerio	GSM540645	ATAGCTCTTTGAATGGTACTGC	AGCGCCATTTACAGAGCTATAA	down	2	0

Secondary structure

AGGGTCGGGAAGAACTTGTGTGGTGCAGATAGCAGCGCCATTTACAGAGCTATAAGCATCATAGTTGTCATAGCTCTTTGAATGGTACTGCCATATGCACTGAACTATCGGCATCTCGCTC
-------------------------------------------------------------------TCATAGCTCTTTGAATGGTACTGC 	1
-------------------------------------------------------------------TCATAGCTCTTTGAATGGTACTG 	5
-------------------------------------------------------------------TCATAGCTCTTTGAATGGTACT 	3
-------------------------------------------------------------------TCATAGCTCTTTGAATGGTAC 	1
---------------------------------------------------------------------ATAGCTCTTTGAATGGTACTGC 	1798
---------------------------------------------------------------------ATAGCTCTTTGAATGGTACTG 	7
---------------------------------------------------------------------ATAGCTCTTTGAATGGTACT 	4
----------------------------------------------------------------------TAGCTCTTTGAATGGTACTGCCA 	1
----------------------------------------------------------------------TAGCTCTTTGAATGGTACTGCC 	19
----------------------------------------------------------------------TAGCTCTTTGAATGGTACTGC 	162
-----------------------------------------------------------------------AGCTCTTTGAATGGTACTGCC 	1
------------------------------------------------------------------------GCTCTTTGAATGGTACTGC 	1

Overlaps with: MNEST034481
Overlaps with miRBase pre-miRNAs: dre-mir-458
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Danio rerio	GSM540643	ATAGCTCTTTGAATGGTACTGC	AGCGCCATTTACAGAGCTATAA	down	2	0

Secondary structure

AGGGTCGGGAAGAACTTGTGTGGTGCAGATAGCAGCGCCATTTACAGAGCTATAAGCATCATAGTTGTCATAGCTCTTTGAATGGTACTGCCATATGCACTGAACTATCGGCATCTCGCTC
-----------------------------TAGCAGCGCCATTTACAGAGCT 	1
---------------------------------AGCGCCATTTACAGAGCTATA 	1
---------------------------------AGCGCCATTTACAGAGCTATAA 	1
---------------------------------------------------------------------ATAGCTCTTTGAATGGTACTGC 	21
---------------------------------------------------------------------ATAGCTCTTTGAATGGTACTG 	1

Overlaps with: MNEST034481
Overlaps with miRBase pre-miRNAs: dre-mir-458
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Danio rerio	GSM540646	ATAGCTCTTTGAATGGTACTGC	AGCGCCATTTACAGAGCTATAA	down	2	0

Secondary structure

AGGGTCGGGAAGAACTTGTGTGGTGCAGATAGCAGCGCCATTTACAGAGCTATAAGCATCATAGTTGTCATAGCTCTTTGAATGGTACTGCCATATGCACTGAACTATCGGCATCTCGCTC
-------------------------------------------------------------------TCATAGCTCTTTGAATGGTACTG 	52
-------------------------------------------------------------------TCATAGCTCTTTGAATGGTACTGC 	17
-------------------------------------------------------------------TCATAGCTCTTTGAATGGTACT 	19
--------------------------------------------------------------------CATAGCTCTTTGAATGGTACTGC 	8
---------------------------------------------------------------------ATAGCTCTTTGAATGGTACTGC 	16670
---------------------------------------------------------------------ATAGCTCTTTGAATGGTACTGCC 	1
---------------------------------------------------------------------ATAGCTCTTTGAATGGTACTG 	27
---------------------------------------------------------------------ATAGCTCTTTGAATGGTACT 	9
----------------------------------------------------------------------TAGCTCTTTGAATGGTACTGCCA 	2
----------------------------------------------------------------------TAGCTCTTTGAATGGTACTGCC 	177
----------------------------------------------------------------------TAGCTCTTTGAATGGTACTGC 	573
-----------------------------------------------------------------------AGCTCTTTGAATGGTACTGCCA 	1
-----------------------------------------------------------------------AGCTCTTTGAATGGTACTGCC 	1
-----------------------------------------------------------------------AGCTCTTTGAATGGTACTGC 	2
------------------------------------------------------------------------GCTCTTTGAATGGTACTGC 	2

Overlaps with: MNEST034481
Overlaps with miRBase pre-miRNAs: dre-mir-458
HuntMi prediction: true miRNA