miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: ATATATTATCAGATTTTCGGTC

selected species: Bombyx mori



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Bombyx mori GSM449726_Anterior_silkgland_clean ATATATTATCAGATTTTCGGTC CCGAACATCTGATAATATACTA down 2 0


Secondary structure

TAAATTACACGACCGAACATCTGATAATATACTATATGATATGATAATATATTATCAGATTTTCGGTCGCGTTATTT
---------------------------------------------AATATATTATCAGATTTTCGGT 	17
---------------------------------------------AATATATTATCAGATTTTCGGTC 	7
---------------------------------------------AATATATTATCAGATTTTCGG 	2
----------------------------------------------ATATATTATCAGATTTTCGGTC 	320
----------------------------------------------ATATATTATCAGATTTTCGGT 	58
----------------------------------------------ATATATTATCAGATTTTCGG 	33
----------------------------------------------ATATATTATCAGATTTTCG 	3
-----------------------------------------------TATATTATCAGATTTTCGGTC 	18
-----------------------------------------------TATATTATCAGATTTTCGGTCG 	7
-----------------------------------------------TATATTATCAGATTTTCGGT 	3
-----------------------------------------------TATATTATCAGATTTTCGG 	1
------------------------------------------------ATATTATCAGATTTTCGGTC 	3
------------------------------------------------ATATTATCAGATTTTCGGT 	1
------------------------------------------------ATATTATCAGATTTTCGGTCGCG 	1
-------------------------------------------------TATTATCAGATTTTCGGTCGCG 	2

Overlaps with: MNEST035633
Overlaps with miRBase pre-miRNAs: bmo-mir-2769
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Bombyx mori GSM449727_Posterior_silkgland_clean ATATATTATCAGATTTTCGGTC CCGAACATCTGATAATATACTA down 2 0


Secondary structure

TAAATTACACGACCGAACATCTGATAATATACTATATGATATGATAATATATTATCAGATTTTCGGTCGCGTTATTT
---------------------------------------------AATATATTATCAGATTTTCGGT 	2
---------------------------------------------AATATATTATCAGATTTTCGG 	2
----------------------------------------------ATATATTATCAGATTTTCGGTC 	22
----------------------------------------------ATATATTATCAGATTTTCGGT 	6
----------------------------------------------ATATATTATCAGATTTTCGG 	2
------------------------------------------------ATATTATCAGATTTTCGGTC 	2

Overlaps with: MNEST035633
Overlaps with miRBase pre-miRNAs: bmo-mir-2769
HuntMi prediction: true miRNA