miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: ATATTGTCCTGTCACAGCAGT

selected species: Drosophila melanogaster



18 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM360257-14325 ATATTGTCCTGTCACAGCAGTA CTGCTGGGTCGGGGCATTAACA up 5 0


Secondary structure

GAAATCGGACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGC
---------------------ATATTGTCCTGTCACAGCAGTA 	18
---------------------ATATTGTCCTGTCACAGCAGT 	4



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM399107-16288 ATATTGTCCTGTCACAGCAGT TGCTGGGTCGGGGCATTAACA up 5 0


Secondary structure

GAAATCGGACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGC
---------------------ATATTGTCCTGTCACAGCAGTA 	52
---------------------ATATTGTCCTGTCACAGCA 	2
---------------------ATATTGTCCTGTCACAGCAGT 	109
---------------------ATATTGTCCTGTCACAGCAGTAT 	3
---------------------ATATTGTCCTGTCACAGCAG 	19
------------------------------------------------------------------CTGCTGGGTCGGGGCATTAACA 	3



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM399106-16287 ATATTGTCCTGTCACAGCAGT TGCTGGGTCGGGGCATTAACA up 5 0


Secondary structure

GAAATCGGACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGC
---------------------ATATTGTCCTGTCACAGCAGTA 	11
---------------------ATATTGTCCTGTCACAGCA 	1
---------------------ATATTGTCCTGTCACAGCAGT 	33
---------------------ATATTGTCCTGTCACAGCAG 	11
----------------------TATTGTCCTGTCACAGCAGTA 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM466487_wt_total ATATTGTCCTGTCACAGCAGT TGCTGGGTCGGGGCATTAACA up 5 0


Secondary structure

GAAATCGGACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGC
--------------------GATATTGTCCTGTCACAGCAGT 	1
---------------------ATATTGTCCTGTCACAGCAGT 	7070
---------------------ATATTGTCCTGTCACAGCAGTATT 	2
---------------------ATATTGTCCTGTCACAGCAGTAT 	88
---------------------ATATTGTCCTGTCACAGCAGTA 	4722
---------------------ATATTGTCCTGTCACAGCA 	200
---------------------ATATTGTCCTGTCACAGCAG 	1769
----------------------TATTGTCCTGTCACAGCAG 	9
----------------------TATTGTCCTGTCACAGCAGT 	28
----------------------TATTGTCCTGTCACAGCAGTA 	26
-----------------------ATTGTCCTGTCACAGCAGT 	31
-----------------------ATTGTCCTGTCACAGCAGTAT 	1
-----------------------ATTGTCCTGTCACAGCAGTA 	21
------------------------TTGTCCTGTCACAGCAGTA 	1
-------------------------------------------TTGTAACACTATATTATAGTTTA 	8
-----------------------------------------------AACACTATATTATAGTTTA 	1
------------------------------------------------------------------CTGCTGGGTCGGGGCATTA 	1
------------------------------------------------------------------CTGCTGGGTCGGGGCATTAAC 	3
------------------------------------------------------------------CTGCTGGGTCGGGGCATTAACA 	29



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Drosophila melanogaster GSM399105-16286 ATATTGTCCTGTCACAGCAGTA CTGCTGGGTCGGGGCATTAACA up 5 0


Secondary structure

GAAATCGGACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGC
--AATCGGACGCTTGCCATTG 	1
---------------------ATATTGTCCTGTCACAGCAGTA 	401
---------------------ATATTGTCCTGTCACAGCA 	1
---------------------ATATTGTCCTGTCACAGCAGT 	282
---------------------ATATTGTCCTGTCACAGCAGTAT 	3
---------------------ATATTGTCCTGTCACAGCAG 	13
----------------------TATTGTCCTGTCACAGCAG 	2
----------------------TATTGTCCTGTCACAGCAGT 	5
----------------------TATTGTCCTGTCACAGCAGTA 	2
------------------------------------------------------------------CTGCTGGGTCGGGGCATTAAC 	6
------------------------------------------------------------------CTGCTGGGTCGGGGCATTAACA 	20
------------------------------------------------------------------CTGCTGGGTCGGGGCATTAA 	2



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Drosophila melanogaster GSM360262-14327 ATATTGTCCTGTCACAGCAGTA CTGCTGGGTCGGGGCATTAACA up 5 0


Secondary structure

GAAATCGGACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGC
---------------------ATATTGTCCTGTCACAGCAGTA 	137
---------------------ATATTGTCCTGTCACAGCAGT 	61
---------------------ATATTGTCCTGTCACAGCAGTAT 	3
---------------------ATATTGTCCTGTCACAGCAG 	4
----------------------TATTGTCCTGTCACAGCAGTA 	1
-----------------------ATTGTCCTGTCACAGCAGT 	1
------------------------------------------------------------------CTGCTGGGTCGGGGCATTAAC 	6
------------------------------------------------------------------CTGCTGGGTCGGGGCATTAACA 	32
------------------------------------------------------------------CTGCTGGGTCGGGGCATTAA 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Drosophila melanogaster GSM360256-14324 ATATTGTCCTGTCACAGCAGTA CTGCTGGGTCGGGGCATTAACA up 5 0


Secondary structure

GAAATCGGACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGC
---------------------ATATTGTCCTGTCACAGCAGTA 	18
---------------------ATATTGTCCTGTCACAGCAGT 	5
----------------------TATTGTCCTGTCACAGCAGTA 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Drosophila melanogaster GSM466496_r2d2_homozygotes_untreated ATATTGTCCTGTCACAGCAGT TGCTGGGTCGGGGCATTAACA up 5 0


Secondary structure

GAAATCGGACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGC
---------------------ATATTGTCCTGTCACAGCAGT 	28551
---------------------ATATTGTCCTGTCACAGCAGTAT 	179
---------------------ATATTGTCCTGTCACAGCAGTA 	13087
---------------------ATATTGTCCTGTCACAGCA 	467
---------------------ATATTGTCCTGTCACAGCAG 	11082
----------------------TATTGTCCTGTCACAGCAGT 	21
----------------------TATTGTCCTGTCACAGCAGTA 	10
-----------------------ATTGTCCTGTCACAGCAGT 	27
-----------------------ATTGTCCTGTCACAGCAGTATT 	3
-----------------------ATTGTCCTGTCACAGCAGTAT 	1
-----------------------ATTGTCCTGTCACAGCAGTA 	9
-------------------------------------------TTGTAACACTATATTATAGTTTA 	6
-------------------------------------------TTGTAACACTATATTATAGTTT 	5
--------------------------------------------------------------TTTACTGCTGGGTCGGGGCATT 	1
------------------------------------------------------------------CTGCTGGGTCGGGGCATTAA 	1
------------------------------------------------------------------CTGCTGGGTCGGGGCATTAAC 	1
------------------------------------------------------------------CTGCTGGGTCGGGGCATTAACA 	46



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Drosophila melanogaster GSM371638-15389 ATATTGTCCTGTCACAGCAGT TGCTGGGTCGGGGCATTAACA up 5 0


Secondary structure

GAAATCGGACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGC
---------------------ATATTGTCCTGTCACAGCAGT 	6
---------------------ATATTGTCCTGTCACAGCAGTA 	1
----------------------TATTGTCCTGTCACAGCAGT 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Drosophila melanogaster GSM286605-9793 ATATTGTCCTGTCACAGCAGTA CTGCTGGGTCGGGGCATTAACA up 5 0


Secondary structure

GAAATCGGACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGC
GAAATCGGACGCTTGCCATTG 	1
---------------------ATATTGTCCTGTCACAGCAGTA 	31
---------------------ATATTGTCCTGTCACAGCAGT 	9
---------------------ATATTGTCCTGTCACAGCAG 	3
------------------------------------------------------------------CTGCTGGGTCGGGGCATTAAC 	2
------------------------------------------------------------------CTGCTGGGTCGGGGCATTAACA 	9
------------------------------------------------------------------CTGCTGGGTCGGGGCATTAA 	2



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Drosophila melanogaster GSM343832-15149 ATATTGTCCTGTCACAGCAGT TGCTGGGTCGGGGCATTAACA up 5 0


Secondary structure

GAAATCGGACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGC
---------------------ATATTGTCCTGTCACAGCAGT 	5



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Drosophila melanogaster GSM399100-5263 ATATTGTCCTGTCACAGCAGT TGCTGGGTCGGGGCATTAACA up 5 0


Secondary structure

GAAATCGGACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGC
---------------------ATATTGTCCTGTCACAGCAGTA 	7
---------------------ATATTGTCCTGTCACAGCAGT 	28
---------------------ATATTGTCCTGTCACAGCAG 	4



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Drosophila melanogaster GSM360260-14326 ATATTGTCCTGTCACAGCAGTA CTGCTGGGTCGGGGCATTAACA up 5 0


Secondary structure

GAAATCGGACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGC
---------------------ATATTGTCCTGTCACAGCAGTA 	95
---------------------ATATTGTCCTGTCACAGCAGT 	70
---------------------ATATTGTCCTGTCACAGCAG 	2
----------------------TATTGTCCTGTCACAGCAGT 	1
------------------------TTGTCCTGTCACAGCAGTA 	1
------------------------------------------------------------------CTGCTGGGTCGGGGCATTAAC 	1
------------------------------------------------------------------CTGCTGGGTCGGGGCATTAACA 	14



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Drosophila melanogaster GSM322543-14323 ATATTGTCCTGTCACAGCAGT TGCTGGGTCGGGGCATTAACA up 5 0


Secondary structure

GAAATCGGACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGC
GAAATCGGACGCTTGCCATTG 	1
---------------------ATATTGTCCTGTCACAGCAGT 	1922
---------------------ATATTGTCCTGTCACAGCAGTAT 	53
---------------------ATATTGTCCTGTCACAGCAGTA 	721
---------------------ATATTGTCCTGTCACAGCAG 	707
---------------------ATATTGTCCTGTCACAGCA 	16
----------------------TATTGTCCTGTCACAGCAGT 	10
----------------------TATTGTCCTGTCACAGCAGTA 	10
-----------------------ATTGTCCTGTCACAGCAGT 	7
-------------------------------------------TTGTAACACTATATTATAGTTTA 	9
------------------------------------------------------------------CTGCTGGGTCGGGGCATTAACA 	174
------------------------------------------------------------------CTGCTGGGTCGGGGCATTAAC 	19
------------------------------------------------------------------CTGCTGGGTCGGGGCATTAA 	11



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Drosophila melanogaster GSM399101-5265 ATATTGTCCTGTCACAGCAGT TGCTGGGTCGGGGCATTAACA up 5 0


Secondary structure

GAAATCGGACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGC
---------------------ATATTGTCCTGTCACAGCAGTA 	8
---------------------ATATTGTCCTGTCACAGCA 	2
---------------------ATATTGTCCTGTCACAGCAGT 	65
---------------------ATATTGTCCTGTCACAGCAG 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Drosophila melanogaster GSM286604-9792 ATATTGTCCTGTCACAGCAGTA CTGCTGGGTCGGGGCATTAACA up 5 0


Secondary structure

GAAATCGGACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGC
---------------------ATATTGTCCTGTCACAGCAGTA 	31
---------------------ATATTGTCCTGTCACAGCAGT 	17
---------------------ATATTGTCCTGTCACAGCAGTAT 	1
---------------------ATATTGTCCTGTCACAGCAG 	9
----------------------TATTGTCCTGTCACAGCAG 	4
------------------------------------------------------------------CTGCTGGGTCGGGGCATTAACA 	5



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Drosophila melanogaster GSM322208-14317 ATATTGTCCTGTCACAGCAGTA CTGCTGGGTCGGGGCATTAACA up 5 0


Secondary structure

GAAATCGGACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGC
---------------------ATATTGTCCTGTCACAGCAGTA 	52
---------------------ATATTGTCCTGTCACAGCA 	3
---------------------ATATTGTCCTGTCACAGCAGT 	24
---------------------ATATTGTCCTGTCACAGCAG 	2
----------------------TATTGTCCTGTCACAGCAGTA 	2
------------------------------------------------------------------CTGCTGGGTCGGGGCATTAACA 	3



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Drosophila melanogaster GSM466492_dcr-2_homozygotes_untreated ATATTGTCCTGTCACAGCAGT TGCTGGGTCGGGGCATTAACA up 5 0


Secondary structure

GAAATCGGACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGC
--------------------GATATTGTCCTGTCACAGCAGT 	1
---------------------ATATTGTCCTGTCACAGCAGT 	5750
---------------------ATATTGTCCTGTCACAGCAGTAT 	133
---------------------ATATTGTCCTGTCACAGCAGTA 	3470
---------------------ATATTGTCCTGTCACAGCAG 	1837
---------------------ATATTGTCCTGTCACAGCA 	196
----------------------TATTGTCCTGTCACAGCAGT 	60
----------------------TATTGTCCTGTCACAGCAGTA 	45
----------------------TATTGTCCTGTCACAGCAG 	18
-----------------------ATTGTCCTGTCACAGCAGTATT 	1
-----------------------ATTGTCCTGTCACAGCAGTAT 	3
-----------------------ATTGTCCTGTCACAGCAGT 	72
-----------------------ATTGTCCTGTCACAGCAGTA 	50
------------------------TTGTCCTGTCACAGCAGTA 	2
-------------------------TGTCCTGTCACAGCAGTAT 	1
-------------------------------------------TTGTAACACTATATTATAGTTTA 	1
------------------------------------------------------------------CTGCTGGGTCGGGGCATTAACA 	15
------------------------------------------------------------------CTGCTGGGTCGGGGCATTA 	2
------------------------------------------------------------------CTGCTGGGTCGGGGCATTAAC 	3



HuntMi prediction: true miRNA