miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: ATCACATTGCCAGGGATTACCA

selected species: Danio rerio



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540643 ATCACATTGCCAGGGATTACCA GGTTCTTGGCATGCTGATTT down 3 2


Secondary structure

GACGGGGGTCTCCAGCTTGTTGTGGCTGTGTGGGTTCTTGGCATGCTGATTTGTGACTGTAGTAAAAAAAAATCACATTGCCAGGGATTACCACACTACCACGGCATTACCAGCAGTTCATG
-----------------------------------------------------------------------ATCACATTGCCAGGGATTACC 	2
-----------------------------------------------------------------------ATCACATTGCCAGGGATTACCAC 	25
-----------------------------------------------------------------------ATCACATTGCCAGGGATTACCA 	26
------------------------------------------------------------------------TCACATTGCCAGGGATTACCACA 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540643 ATCACATTGCCAGGGATTACCA GGTTCCTGGCGTGCTGATTT down 3 2


Secondary structure

TGCTGGCTGTGTGGGTTCCTGGCGTGCTGATTTGTGACTTAAGATAAAAATCACATTGCCAGGGATTACCACACAACCGCC
-----------TGGGTTCCTGGCGTGCTGATTT 	4
------------GGGTTCCTGGCGTGCTGATTT 	1
------------GGGTTCCTGGCGTGCTGATT 	1
-------------------------------------------------ATCACATTGCCAGGGATTACC 	2
-------------------------------------------------ATCACATTGCCAGGGATTACCAC 	25
-------------------------------------------------ATCACATTGCCAGGGATTACCA 	26
--------------------------------------------------TCACATTGCCAGGGATTACCACA 	1


HuntMi prediction: true miRNA