miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: ATCACATTGCCAGGGATTTCCA

selected species: Danio rerio

10 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Danio rerio	GSM540645	ATCACATTGCCAGGGATTTCCA	GATTCCTGGCAGAGTGATTT	down	2	2

Secondary structure

ACCAGCTGGAGGGATTCCTGGCAGAGTGATTTGGGATTATATCATAAAATCACATTGCCAGGGATTTCCAACCAGCTGT
------------------------------------------------ATCACATTGCCAGGGATTTCCAA 	41
------------------------------------------------ATCACATTGCCAGGGATTTCCA 	88
------------------------------------------------ATCACATTGCCAGGGATTTC 	1
------------------------------------------------ATCACATTGCCAGGGATTTCC 	18
-------------------------------------------------TCACATTGCCAGGGATTTCCAA 	2
-------------------------------------------------TCACATTGCCAGGGATTTC 	1
---------------------------------------------------ACATTGCCAGGGATTTCCA 	1

Overlaps with: MNEST034226
Overlaps with miRBase pre-miRNAs: ccr-mir-23a dre-mir-23a-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Danio rerio	GSM540645	ATCACATTGCCAGGGATTTCCA	GGTTCCTGGCACCGTGATTT	down	4	2

Secondary structure

GTGGTGCGGCTGTGGCGGGGAGGGTTCCTGGCACCGTGATTTGGTGGATAAACAGAAATGAAAATCACATTGCCAGGGATTTCCACTCCTGCACGGTTCTTCAG
---------------------GGGTTCCTGGCACCGTGATTT 	1
---------------------------------------------------------------ATCACATTGCCAGGGATTTCCACT 	5
---------------------------------------------------------------ATCACATTGCCAGGGATTTCCA 	88
---------------------------------------------------------------ATCACATTGCCAGGGATTTC 	1
---------------------------------------------------------------ATCACATTGCCAGGGATTTCCAC 	9
---------------------------------------------------------------ATCACATTGCCAGGGATTTCC 	18
----------------------------------------------------------------TCACATTGCCAGGGATTTC 	1
------------------------------------------------------------------ACATTGCCAGGGATTTCCA 	1

Overlaps with: MNEST034224
Overlaps with miRBase pre-miRNAs: dre-mir-23a-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Danio rerio	GSM540645	ATCACATTGCCAGGGATTTCCA	GGAATTCCTGGCAGAGTGATTT	down	2	0

Secondary structure

CCCTCCTCTTCTGCCGGCCAGGGGAATTCCTGGCAGAGTGATTTTTAAACCTAATGACTGAATCACATTGCCAGGGATTTCCAATGGCTCGTGTGACTCAGA
-------------------------------------------------------------ATCACATTGCCAGGGATTTCCAAT 	6
-------------------------------------------------------------ATCACATTGCCAGGGATTTCCAA 	41
-------------------------------------------------------------ATCACATTGCCAGGGATTTCCA 	88
-------------------------------------------------------------ATCACATTGCCAGGGATTTC 	1
-------------------------------------------------------------ATCACATTGCCAGGGATTTCC 	18
--------------------------------------------------------------TCACATTGCCAGGGATTTCCAA 	2
--------------------------------------------------------------TCACATTGCCAGGGATTTC 	1
----------------------------------------------------------------ACATTGCCAGGGATTTCCA 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Danio rerio	GSM540642	ATCACATTGCCAGGGATTTCCA	GATTCCTGGCAGAGTGATTT	down	2	2

Secondary structure

ACCAGCTGGAGGGATTCCTGGCAGAGTGATTTGGGATTATATCATAAAATCACATTGCCAGGGATTTCCAACCAGCTGT
------------------------------------------------ATCACATTGCCAGGGATTTCCAA 	5
------------------------------------------------ATCACATTGCCAGGGATTTCCA 	65
------------------------------------------------ATCACATTGCCAGGGATTTCC 	7
-------------------------------------------------TCACATTGCCAGGGATTTCCA 	5
--------------------------------------------------CACATTGCCAGGGATTTCCA 	1

Overlaps with: MNEST034226
Overlaps with miRBase pre-miRNAs: ccr-mir-23a dre-mir-23a-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Danio rerio	GSM540642	ATCACATTGCCAGGGATTTCCA	GGTTCCTGGCACCGTGATTT	down	4	2

Secondary structure

GTGGTGCGGCTGTGGCGGGGAGGGTTCCTGGCACCGTGATTTGGTGGATAAACAGAAATGAAAATCACATTGCCAGGGATTTCCACTCCTGCACGGTTCTTCAG
---------------------------------------------------------------ATCACATTGCCAGGGATTTCCACT 	3
---------------------------------------------------------------ATCACATTGCCAGGGATTTCCAC 	1
---------------------------------------------------------------ATCACATTGCCAGGGATTTCCA 	65
---------------------------------------------------------------ATCACATTGCCAGGGATTTCC 	7
----------------------------------------------------------------TCACATTGCCAGGGATTTCCACT 	1
----------------------------------------------------------------TCACATTGCCAGGGATTTCCA 	5
-----------------------------------------------------------------CACATTGCCAGGGATTTCCA 	1

Overlaps with: MNEST034224
Overlaps with miRBase pre-miRNAs: dre-mir-23a-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Danio rerio	GSM540642	ATCACATTGCCAGGGATTTCCA	GGAATTCCTGGCAGAGTGATTT	down	2	0

Secondary structure

CCCTCCTCTTCTGCCGGCCAGGGGAATTCCTGGCAGAGTGATTTTTAAACCTAATGACTGAATCACATTGCCAGGGATTTCCAATGGCTCGTGTGACTCAGA
----------------------GGAATTCCTGGCAGAGTGATTTTT 	2
----------------------GGAATTCCTGGCAGAGTGATTTT 	2
----------------------GGAATTCCTGGCAGAGTGATTT 	3
----------------------GGAATTCCTGGCAGAGTGATT 	2
----------------------GGAATTCCTGGCAGAGTGAT 	2
-----------------------GAATTCCTGGCAGAGTGATTT 	4
------------------------------------------TTTTAAACCTAATGACTGAAT 	1
-------------------------------------------------------------ATCACATTGCCAGGGATTTCCAAT 	5
-------------------------------------------------------------ATCACATTGCCAGGGATTTCCAA 	5
-------------------------------------------------------------ATCACATTGCCAGGGATTTCCA 	65
-------------------------------------------------------------ATCACATTGCCAGGGATTTCC 	7
--------------------------------------------------------------TCACATTGCCAGGGATTTCCA 	5
---------------------------------------------------------------CACATTGCCAGGGATTTCCAAT 	2
---------------------------------------------------------------CACATTGCCAGGGATTTCCA 	1
----------------------------------------------------------------ACATTGCCAGGGATTTCCAAT 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Danio rerio	GSM540643	ATCACATTGCCAGGGATTTCCA	GATTCCTGGCAGAGTGATTT	down	2	2

Secondary structure

ACCAGCTGGAGGGATTCCTGGCAGAGTGATTTGGGATTATATCATAAAATCACATTGCCAGGGATTTCCAACCAGCTGT
-----------GGATTCCTGGCAGAGTGATTT 	10
------------------------------------------------ATCACATTGCCAGGGATTTCCAA 	3
------------------------------------------------ATCACATTGCCAGGGATTTCCA 	32
------------------------------------------------ATCACATTGCCAGGGATTTCC 	1

Overlaps with: MNEST034226
Overlaps with miRBase pre-miRNAs: ccr-mir-23a dre-mir-23a-3
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Danio rerio	GSM540643	ATCACATTGCCAGGGATTTCCA	GGTTCCTGGCACCGTGATTT	down	4	2

Secondary structure

GTGGTGCGGCTGTGGCGGGGAGGGTTCCTGGCACCGTGATTTGGTGGATAAACAGAAATGAAAATCACATTGCCAGGGATTTCCACTCCTGCACGGTTCTTCAG
---------------------------------------------------------------ATCACATTGCCAGGGATTTCCACT 	1
---------------------------------------------------------------ATCACATTGCCAGGGATTTCCA 	32
---------------------------------------------------------------ATCACATTGCCAGGGATTTCCAC 	1
---------------------------------------------------------------ATCACATTGCCAGGGATTTCC 	1

Overlaps with: MNEST034224
Overlaps with miRBase pre-miRNAs: dre-mir-23a-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Danio rerio	GSM540643	ATCACATTGCCAGGGATTTCCA	GGAATTCCTGGCAGAGTGATTT	down	2	0

Secondary structure

CCCTCCTCTTCTGCCGGCCAGGGGAATTCCTGGCAGAGTGATTTTTAAACCTAATGACTGAATCACATTGCCAGGGATTTCCAATGGCTCGTGTGACTCAGA
----------------------GGAATTCCTGGCAGAGTGATTTTT 	1
----------------------GGAATTCCTGGCAGAGTGATTT 	14
-----------------------GAATTCCTGGCAGAGTGATTT 	6
-------------------------------------------------------------ATCACATTGCCAGGGATTTCCAA 	3
-------------------------------------------------------------ATCACATTGCCAGGGATTTCCA 	32
-------------------------------------------------------------ATCACATTGCCAGGGATTTCC 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Danio rerio	GSM540646	ATCACATTGCCAGGGATTTCCA	GGTTCCTGGCACCGTGATTT	down	4	2

Secondary structure

GTGGTGCGGCTGTGGCGGGGAGGGTTCCTGGCACCGTGATTTGGTGGATAAACAGAAATGAAAATCACATTGCCAGGGATTTCCACTCCTGCACGGTTCTTCAG
---------------------------------------------------------------ATCACATTGCCAGGGATTTCCACT 	81
---------------------------------------------------------------ATCACATTGCCAGGGATTTCCAC 	79
---------------------------------------------------------------ATCACATTGCCAGGGATTTCCA 	448
---------------------------------------------------------------ATCACATTGCCAGGGATTTCC 	86
----------------------------------------------------------------TCACATTGCCAGGGATTTCCAC 	3
----------------------------------------------------------------TCACATTGCCAGGGATTTCCACT 	8
----------------------------------------------------------------TCACATTGCCAGGGATTTCC 	1
----------------------------------------------------------------TCACATTGCCAGGGATTTCCA 	2
-----------------------------------------------------------------CACATTGCCAGGGATTTCCACT 	1

Overlaps with: MNEST034224
Overlaps with miRBase pre-miRNAs: dre-mir-23a-1
HuntMi prediction: true miRNA