miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: ATCAGTTTCTTGTTCGTTTCA

selected species: Arabidopsis thaliana



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM366866 ATCAGTTTCTTGTTCGTTTCA AAACGAACAAAAAACTGATGG up 1 0


Secondary structure

TATATATATATTTTTTTTTTTTGATAAATACTTTTGTTTGCTTACAAGTATAAAGTCATCATGTTTTTTTCATCAGTTTCTTGTTCGTTTCAAAATTATGATTTTTGTTTACTTACACTCATAATCTTGAAACGAACAAAAAACTGATGGAAAAACATGAGGACTTTATACTTGTAAATAAATAAAAATATTTATTAGAAATAAATAAACAAAAATAT
-----------------------------------------------------------------TTTTTCATCAGTTTCTTGTTCG 	1
-----------------------------------------------------------------------ATCAGTTTCTTGTTCGTTTCA 	13


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM304283 ATCAGTTTCTTGTTCGTTTCA AAACGAACAAAAAACTGATGG up 1 0


Secondary structure

TATATATATATTTTTTTTTTTTGATAAATACTTTTGTTTGCTTACAAGTATAAAGTCATCATGTTTTTTTCATCAGTTTCTTGTTCGTTTCAAAATTATGATTTTTGTTTACTTACACTCATAATCTTGAAACGAACAAAAAACTGATGGAAAAACATGAGGACTTTATACTTGTAAATAAATAAAAATATTTATTAGAAATAAATAAACAAAAATAT
-----------------------------------------------------------------------ATCAGTTTCTTGTTCGTTTCA 	14
------------------------------------------------------------------------------------------------------------------------------------------------------AAAAACATGAGGACTTTATAC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------AAACATGAGGACTTTATACT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------AACATGAGGACTTTATACTT 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------AACATGAGGACTTTATACT 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM518432-13544 ATCAGTTTCTTGTTCGTTTCA AAACGAACAAAAAACTGATGG up 1 0


Secondary structure

TATATATATATTTTTTTTTTTTGATAAATACTTTTGTTTGCTTACAAGTATAAAGTCATCATGTTTTTTTCATCAGTTTCTTGTTCGTTTCAAAATTATGATTTTTGTTTACTTACACTCATAATCTTGAAACGAACAAAAAACTGATGGAAAAACATGAGGACTTTATACTTGTAAATAAATAAAAATATTTATTAGAAATAAATAAACAAAAATAT
-----------------------------------------------------------------------ATCAGTTTCTTGTTCGTTTCA 	30


HuntMi prediction: true miRNA