miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: ATCATAGAGGAAAATCCACGT

selected species: Homo sapiens



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM494810_Normal_2 ATCATAGAGGAAAATCCACGT GTAGATTCTCCTTCTATGAGTA down 4 1


Secondary structure

ATCCTTCTTTGGTATTTAAAAGGTAGATTCTCCTTCTATGAGTACATTATTTATGATTAATCATAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGC
----------------------GTAGATTCTCCTTCTATGAGTAC 	1
----------------------------------------------------------AATCATAGAGGAAAATCCACGT 	1
-----------------------------------------------------------ATCATAGAGGAAAATCCACGTT 	3
-----------------------------------------------------------ATCATAGAGGAAAATCCACGT 	17
-----------------------------------------------------------ATCATAGAGGAAAATCCACGTTT 	1

Overlaps with: MNEST026823
Overlaps with miRBase pre-miRNAs: mml-mir-376a-1 ppy-mir-376a-1 cfa-mir-376a-1 ptr-mir-376a-1 ggo-mir-376a hsa-mir-376a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM494810_Normal_2 ATCATAGAGGAAAATCCACGT GTAGATTTTCCTTCTATGGTTA down 2 1


Secondary structure

AACCTTCTTTGGTATTTAAAAGGTAGATTTTCCTTCTATGGTTACGTGTTTGATGGTTAATCATAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGC
----------------------------------------------------------AATCATAGAGGAAAATCCACGT 	1
-----------------------------------------------------------ATCATAGAGGAAAATCCACGTT 	3
-----------------------------------------------------------ATCATAGAGGAAAATCCACGT 	17
-----------------------------------------------------------ATCATAGAGGAAAATCCACGTTT 	1

Overlaps with: MNEST027880 MNEST028618 MNEST030981
Overlaps with miRBase pre-miRNAs: ppy-mir-376a-2 mml-mir-376a-2 hsa-mir-376a-2 ptr-mir-376a-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Homo sapiens GSM531982 ATCATAGAGGAAAATCCACGT GTAGATTCTCCTTCTATGAGTA down 4 1


Secondary structure

ATCCTTCTTTGGTATTTAAAAGGTAGATTCTCCTTCTATGAGTACATTATTTATGATTAATCATAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGC
--------------------AGGTAGATTCTCCTTCTATGAGT 	6
--------------------AGGTAGATTCTCCTTCTATGAG 	1
---------------------GGTAGATTCTCCTTCTATGAGT 	1
----------------------GTAGATTCTCCTTCTATGAGT 	1
-----------------------TAGATTCTCCTTCTATGAGTAC 	7
-----------------------TAGATTCTCCTTCTATGAGTA 	4
-----------------------TAGATTCTCCTTCTATGAGTACA 	2
------------------------AGATTCTCCTTCTATGAGTA 	1
----------------------------------------------------------AATCATAGAGGAAAATCCACGT 	21
----------------------------------------------------------AATCATAGAGGAAAATCCACG 	4
----------------------------------------------------------AATCATAGAGGAAAATCCA 	1
----------------------------------------------------------AATCATAGAGGAAAATCCAC 	1
-----------------------------------------------------------ATCATAGAGGAAAATCCACGTT 	56
-----------------------------------------------------------ATCATAGAGGAAAATCCACGT 	940
-----------------------------------------------------------ATCATAGAGGAAAATCCACG 	153
-----------------------------------------------------------ATCATAGAGGAAAATCCAC 	80
-----------------------------------------------------------ATCATAGAGGAAAATCCACGTTT 	5
--------------------------------------------------------------ATAGAGGAAAATCCACGTT 	1

Overlaps with: MNEST026823
Overlaps with miRBase pre-miRNAs: mml-mir-376a-1 ppy-mir-376a-1 cfa-mir-376a-1 ptr-mir-376a-1 ggo-mir-376a hsa-mir-376a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Homo sapiens GSM531982 ATCATAGAGGAAAATCCACGT GTAGATTTTCCTTCTATGGTTA down 2 1


Secondary structure

AACCTTCTTTGGTATTTAAAAGGTAGATTTTCCTTCTATGGTTACGTGTTTGATGGTTAATCATAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGC
----------------------------------------------------------AATCATAGAGGAAAATCCACGT 	21
----------------------------------------------------------AATCATAGAGGAAAATCCACG 	4
----------------------------------------------------------AATCATAGAGGAAAATCCA 	1
----------------------------------------------------------AATCATAGAGGAAAATCCAC 	1
-----------------------------------------------------------ATCATAGAGGAAAATCCACGTT 	56
-----------------------------------------------------------ATCATAGAGGAAAATCCACGT 	940
-----------------------------------------------------------ATCATAGAGGAAAATCCACG 	153
-----------------------------------------------------------ATCATAGAGGAAAATCCAC 	80
-----------------------------------------------------------ATCATAGAGGAAAATCCACGTTT 	5
--------------------------------------------------------------ATAGAGGAAAATCCACGTT 	1

Overlaps with: MNEST027880 MNEST028618 MNEST030981
Overlaps with miRBase pre-miRNAs: ppy-mir-376a-2 mml-mir-376a-2 hsa-mir-376a-2 ptr-mir-376a-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Homo sapiens GSM531986-13294 ATCATAGAGGAAAATCCACGT GTAGATTTTCCTTCTATGGTTA down 2 1


Secondary structure

AACCTTCTTTGGTATTTAAAAGGTAGATTTTCCTTCTATGGTTACGTGTTTGATGGTTAATCATAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGC
----------------------------------------------------------AATCATAGAGGAAAATCCAC 	1
-----------------------------------------------------------ATCATAGAGGAAAATCCACGT 	7
-----------------------------------------------------------ATCATAGAGGAAAATCCACG 	2

Overlaps with: MNEST027880 MNEST028618 MNEST030981
Overlaps with miRBase pre-miRNAs: ppy-mir-376a-2 mml-mir-376a-2 hsa-mir-376a-2 ptr-mir-376a-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Homo sapiens GSM531986-13294 ATCATAGAGGAAAATCCACGT GTAGATTCTCCTTCTATGAGTA down 4 1


Secondary structure

ATCCTTCTTTGGTATTTAAAAGGTAGATTCTCCTTCTATGAGTACATTATTTATGATTAATCATAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGC
----------------------------------------------------------AATCATAGAGGAAAATCCAC 	1
-----------------------------------------------------------ATCATAGAGGAAAATCCACGT 	7
-----------------------------------------------------------ATCATAGAGGAAAATCCACG 	2

Overlaps with: MNEST026823
Overlaps with miRBase pre-miRNAs: mml-mir-376a-1 ppy-mir-376a-1 cfa-mir-376a-1 ptr-mir-376a-1 ggo-mir-376a hsa-mir-376a-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Homo sapiens GSM531975 ATCATAGAGGAAAATCCACGT GTAGATTTTCCTTCTATGGTTA down 2 1


Secondary structure

AACCTTCTTTGGTATTTAAAAGGTAGATTTTCCTTCTATGGTTACGTGTTTGATGGTTAATCATAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGC
-----------------------------------------------------------ATCATAGAGGAAAATCCACGT 	14
-----------------------------------------------------------ATCATAGAGGAAAATCCACGTT 	1
-----------------------------------------------------------ATCATAGAGGAAAATCCAC 	1

Overlaps with: MNEST027880 MNEST028618 MNEST030981
Overlaps with miRBase pre-miRNAs: ppy-mir-376a-2 mml-mir-376a-2 hsa-mir-376a-2 ptr-mir-376a-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Homo sapiens GSM531975 ATCATAGAGGAAAATCCACGT GTAGATTCTCCTTCTATGAGTA down 4 1


Secondary structure

ATCCTTCTTTGGTATTTAAAAGGTAGATTCTCCTTCTATGAGTACATTATTTATGATTAATCATAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGC
-----------------------TAGATTCTCCTTCTATGAGTAC 	2
-----------------------TAGATTCTCCTTCTATGAGTA 	1
-----------------------------------------------------------ATCATAGAGGAAAATCCACGT 	14
-----------------------------------------------------------ATCATAGAGGAAAATCCACGTT 	1
-----------------------------------------------------------ATCATAGAGGAAAATCCAC 	1

Overlaps with: MNEST026823
Overlaps with miRBase pre-miRNAs: mml-mir-376a-1 ppy-mir-376a-1 cfa-mir-376a-1 ptr-mir-376a-1 ggo-mir-376a hsa-mir-376a-1
HuntMi prediction: true miRNA