miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: ATCATAGAGGAACATCCACTT

selected species: Mus musculus



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM539869 ATCATAGAGGAACATCCACTT GTGGATATTCCTTCTATGGTTA down 1 1


Secondary structure

GTCCTTCTTTGGTATTTAAAAGGTGGATATTCCTTCTATGGTTACGTGCTTCCTGGATAATCATAGAGGAACATCCACTTTTTCAGTATCAAATGTCGC
---------------------GGTGGATATTCCTTCTATGGTTA 	2
---------------------GGTGGATATTCCTTCTATGGTT 	5
---------------------GGTGGATATTCCTTCTATGGT 	2
----------------------GTGGATATTCCTTCTATGGTTA 	17
----------------------GTGGATATTCCTTCTATGGTT 	9
-------------------------------------------------TTCCTGGATAATCATAGAGGAACA 	1
--------------------------------------------------------ATAATCATAGAGGAACATCCACTT 	1
---------------------------------------------------------TAATCATAGAGGAACATCCACT 	1
----------------------------------------------------------AATCATAGAGGAACATCCA 	1
-----------------------------------------------------------ATCATAGAGGAACATCCACTTTT 	5
-----------------------------------------------------------ATCATAGAGGAACATCCACTTT 	34
-----------------------------------------------------------ATCATAGAGGAACATCCACTT 	51
-----------------------------------------------------------ATCATAGAGGAACATCCACT 	10
-----------------------------------------------------------ATCATAGAGGAACATCCAC 	2
------------------------------------------------------------TCATAGAGGAACATCCACTTT 	1

Overlaps with: MNEST032046
Overlaps with miRBase pre-miRNAs: rno-mir-376b mmu-mir-376b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM539878 ATCATAGAGGAACATCCACTTT GGTGGATATTCCTTCTATGGTTA down 1 1


Secondary structure

AGTCCTTCTTTGGTATTTAAAAGGTGGATATTCCTTCTATGGTTACGTGCTTCCTGGATAATCATAGAGGAACATCCACTTTTTCAGTATCAAATGTCGCT
-----------------------GTGGATATTCCTTCTATGGTTA 	1
------------------------------------------------------------ATCATAGAGGAACATCCACTTTTTC 	1
------------------------------------------------------------ATCATAGAGGAACATCCACTT 	2
------------------------------------------------------------ATCATAGAGGAACATCCACTTT 	5

Overlaps with: MNEST032046
Overlaps with miRBase pre-miRNAs: rno-mir-376b mmu-mir-376b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM539873 ATCATAGAGGAACATCCACTT GTGGATATTCCTTCTATGGTTA down 1 1


Secondary structure

GTCCTTCTTTGGTATTTAAAAGGTGGATATTCCTTCTATGGTTACGTGCTTCCTGGATAATCATAGAGGAACATCCACTTTTTCAGTATCAAATGTCGC
----------------------GTGGATATTCCTTCTATGGTTA 	1
-----------------------------------------------------------ATCATAGAGGAACATCCACTTT 	2
-----------------------------------------------------------ATCATAGAGGAACATCCACTT 	6

Overlaps with: MNEST032046
Overlaps with miRBase pre-miRNAs: rno-mir-376b mmu-mir-376b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM539867 ATCATAGAGGAACATCCACTT GTGGATATTCCTTCTATGGTTA down 1 1


Secondary structure

GTCCTTCTTTGGTATTTAAAAGGTGGATATTCCTTCTATGGTTACGTGCTTCCTGGATAATCATAGAGGAACATCCACTTTTTCAGTATCAAATGTCGC
---------------------GGTGGATATTCCTTCTATGGTTA 	3
----------------------GTGGATATTCCTTCTATGGTTA 	10
----------------------GTGGATATTCCTTCTATGGTT 	1
----------------------------------------------------CTGGATAATCATAGAGGAACATCCA 	1
--------------------------------------------------------ATAATCATAGAGGAACATCCACTT 	1
---------------------------------------------------------TAATCATAGAGGAACATCCACT 	1
----------------------------------------------------------AATCATAGAGGAACATCCACTT 	3
-----------------------------------------------------------ATCATAGAGGAACATCCACTTTTT 	1
-----------------------------------------------------------ATCATAGAGGAACATCCACTT 	253
-----------------------------------------------------------ATCATAGAGGAACATCCAC 	1
-----------------------------------------------------------ATCATAGAGGAACATCCACTTTT 	7
-----------------------------------------------------------ATCATAGAGGAACATCCACTTT 	78
-----------------------------------------------------------ATCATAGAGGAACATCCACT 	10
--------------------------------------------------------------ATAGAGGAACATCCACTTT 	2

Overlaps with: MNEST032046
Overlaps with miRBase pre-miRNAs: rno-mir-376b mmu-mir-376b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM539854 ATCATAGAGGAACATCCACTT GTGGATATTCCTTCTATGGTTA down 1 1


Secondary structure

GTCCTTCTTTGGTATTTAAAAGGTGGATATTCCTTCTATGGTTACGTGCTTCCTGGATAATCATAGAGGAACATCCACTTTTTCAGTATCAAATGTCGC
---------------------GGTGGATATTCCTTCTATGGTT 	1
----------------------GTGGATATTCCTTCTATGGTTA 	1
----------------------------------------------------------AATCATAGAGGAACATCCACTT 	1
-----------------------------------------------------------ATCATAGAGGAACATCCACTTTTT 	1
-----------------------------------------------------------ATCATAGAGGAACATCCACTTTT 	7
-----------------------------------------------------------ATCATAGAGGAACATCCACTT 	54
-----------------------------------------------------------ATCATAGAGGAACATCCACTTT 	34

Overlaps with: MNEST032046
Overlaps with miRBase pre-miRNAs: rno-mir-376b mmu-mir-376b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Mus musculus GSM539874 ATCATAGAGGAACATCCACTTT GGTGGATATTCCTTCTATGGTTA down 1 1


Secondary structure

AGTCCTTCTTTGGTATTTAAAAGGTGGATATTCCTTCTATGGTTACGTGCTTCCTGGATAATCATAGAGGAACATCCACTTTTTCAGTATCAAATGTCGCT
----------------------GGTGGATATTCCTTCTATGGTT 	2
-----------------------GTGGATATTCCTTCTATGGTTA 	3
-----------------------GTGGATATTCCTTCTATGGTT 	1
-----------------------------------------------------------AATCATAGAGGAACATCCACTT 	1
------------------------------------------------------------ATCATAGAGGAACATCCACTT 	24
------------------------------------------------------------ATCATAGAGGAACATCCACTTTT 	4
------------------------------------------------------------ATCATAGAGGAACATCCACTTT 	31
------------------------------------------------------------ATCATAGAGGAACATCCACT 	4
-------------------------------------------------------------TCATAGAGGAACATCCACTTTT 	1
-------------------------------------------------------------TCATAGAGGAACATCCACTTT 	1
-------------------------------------------------------------TCATAGAGGAACATCCACTT 	1

Overlaps with: MNEST032046
Overlaps with miRBase pre-miRNAs: rno-mir-376b mmu-mir-376b
HuntMi prediction: true miRNA