miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: ATCATGATGGGCTCCTCGGTGT

selected species: Homo sapiens

13 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Homo sapiens	GSM651905	ATCATGATGGGCTCCTCGGTGT	AGTACGGTGAGCCTGTCATTATTC	down	5	0

Secondary structure

GAAGACCCAATGCCCGGGGAGAAGTACGGTGAGCCTGTCATTATTCAGAGAGGCTAGATCCTCTGTGTTGAGAAGGATCATGATGGGCTCCTCGGTGTTCTCCAGGTAGCGGCACCA
------------------------TACGGTGAGCCTGTCATTATTC 	14
------------------------TACGGTGAGCCTGTCATTATT 	12
------------------------TACGGTGAGCCTGTCATTAT 	2
------------------------TACGGTGAGCCTGTCATTATTCA 	1
-------------------------ACGGTGAGCCTGTCATTATT 	2
---------------------------------------------------------------------------GATCATGATGGGCTCCTCGGTGT 	6
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTGTT 	29
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTGT 	436
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTG 	47
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGT 	12
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGG 	23
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGTGT 	24
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGTG 	26
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGT 	6
-------------------------------------------------------------------------------ATGATGGGCTCCTCGGTGT 	8

Overlaps with: MNEST030375
Overlaps with miRBase pre-miRNAs: cfa-mir-433 ppy-mir-433 rno-mir-433 hsa-mir-433 ggo-mir-433 ptr-mir-433
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Homo sapiens	GSM494810_Normal_2	ATCATGATGGGCTCCTCGGTGT	AGTACGGTGAGCCTGTCATTATTC	down	5	0

Secondary structure

GAAGACCCAATGCCCGGGGAGAAGTACGGTGAGCCTGTCATTATTCAGAGAGGCTAGATCCTCTGTGTTGAGAAGGATCATGATGGGCTCCTCGGTGTTCTCCAGGTAGCGGCACCA
------------------------TACGGTGAGCCTGTCATTATT 	2
------------------------TACGGTGAGCCTGTCATTATTC 	1
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTGTT 	13
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTGT 	70
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTG 	4
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGT 	1
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGG 	1

Overlaps with: MNEST030375
Overlaps with miRBase pre-miRNAs: cfa-mir-433 ppy-mir-433 rno-mir-433 hsa-mir-433 ggo-mir-433 ptr-mir-433
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Homo sapiens	GSM531974	ATCATGATGGGCTCCTCGGTGT	AGTACGGTGAGCCTGTCATTATTC	down	5	0

Secondary structure

GAAGACCCAATGCCCGGGGAGAAGTACGGTGAGCCTGTCATTATTCAGAGAGGCTAGATCCTCTGTGTTGAGAAGGATCATGATGGGCTCCTCGGTGTTCTCCAGGTAGCGGCACCA
------------------------TACGGTGAGCCTGTCATTATTC 	1
---------------------------------------------------------------------------GATCATGATGGGCTCCTCGGTGT 	1
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTGT 	73
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTGTT 	6
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTG 	7
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGG 	2
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGT 	1
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGTGT 	6
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGTG 	2
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGTGTT 	1

Overlaps with: MNEST030375
Overlaps with miRBase pre-miRNAs: cfa-mir-433 ppy-mir-433 rno-mir-433 hsa-mir-433 ggo-mir-433 ptr-mir-433
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Homo sapiens	GSM494809_Normal_1	ATCATGATGGGCTCCTCGGTGT	AGTACGGTGAGCCTGTCATTATTC	down	5	0

Secondary structure

GAAGACCCAATGCCCGGGGAGAAGTACGGTGAGCCTGTCATTATTCAGAGAGGCTAGATCCTCTGTGTTGAGAAGGATCATGATGGGCTCCTCGGTGTTCTCCAGGTAGCGGCACCA
------------------------TACGGTGAGCCTGTCATTATT 	3
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTGT 	33
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTG 	7
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGT 	1
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGTGT 	2
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGTGTT 	1
-------------------------------------------------------------------------------ATGATGGGCTCCTCGGTGT 	1

Overlaps with: MNEST030375
Overlaps with miRBase pre-miRNAs: cfa-mir-433 ppy-mir-433 rno-mir-433 hsa-mir-433 ggo-mir-433 ptr-mir-433
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Homo sapiens	GSM651908	ATCATGATGGGCTCCTCGGTGT	AGTACGGTGAGCCTGTCATTATTC	down	5	0

Secondary structure

GAAGACCCAATGCCCGGGGAGAAGTACGGTGAGCCTGTCATTATTCAGAGAGGCTAGATCCTCTGTGTTGAGAAGGATCATGATGGGCTCCTCGGTGTTCTCCAGGTAGCGGCACCA
------------------------TACGGTGAGCCTGTCATTATTC 	15
------------------------TACGGTGAGCCTGTCATTATT 	16
------------------------TACGGTGAGCCTGTCATTAT 	1
---------------------------------------------------------------------------GATCATGATGGGCTCCTCGGTGT 	5
---------------------------------------------------------------------------GATCATGATGGGCTCCTCGGTGTT 	1
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTGTT 	48
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTGT 	675
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTG 	86
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGT 	26
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGG 	35
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGTGT 	33
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGTG 	53
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGT 	17
------------------------------------------------------------------------------CATGATGGGCTCCTCGGTG 	1
-------------------------------------------------------------------------------ATGATGGGCTCCTCGGTGT 	14
-------------------------------------------------------------------------------ATGATGGGCTCCTCGGTGTT 	1

Overlaps with: MNEST030375
Overlaps with miRBase pre-miRNAs: cfa-mir-433 ppy-mir-433 rno-mir-433 hsa-mir-433 ggo-mir-433 ptr-mir-433
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Homo sapiens	GSM651906	ATCATGATGGGCTCCTCGGTGT	AGTACGGTGAGCCTGTCATTATTC	down	5	0

Secondary structure

GAAGACCCAATGCCCGGGGAGAAGTACGGTGAGCCTGTCATTATTCAGAGAGGCTAGATCCTCTGTGTTGAGAAGGATCATGATGGGCTCCTCGGTGTTCTCCAGGTAGCGGCACCA
------------------------TACGGTGAGCCTGTCATTATTC 	9
------------------------TACGGTGAGCCTGTCATTATT 	17
---------------------------------------------------------------------------GATCATGATGGGCTCCTCGGTGT 	1
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTGTT 	24
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTGT 	313
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTG 	40
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGG 	14
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGT 	7
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGTGT 	24
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGTG 	19
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGT 	3
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGTGTT 	1
-------------------------------------------------------------------------------ATGATGGGCTCCTCGGTGT 	13

Overlaps with: MNEST030375
Overlaps with miRBase pre-miRNAs: cfa-mir-433 ppy-mir-433 rno-mir-433 hsa-mir-433 ggo-mir-433 ptr-mir-433
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Homo sapiens	GSM531982	ATCATGATGGGCTCCTCGGTGT	AGTACGGTGAGCCTGTCATTATTC	down	5	0

Secondary structure

GAAGACCCAATGCCCGGGGAGAAGTACGGTGAGCCTGTCATTATTCAGAGAGGCTAGATCCTCTGTGTTGAGAAGGATCATGATGGGCTCCTCGGTGTTCTCCAGGTAGCGGCACCA
------------------------TACGGTGAGCCTGTCATTATTC 	6
------------------------TACGGTGAGCCTGTCATTATT 	5
------------------------TACGGTGAGCCTGTCATTAT 	2
-------------------------ACGGTGAGCCTGTCATTATTC 	1
-------------------------------------------------------------------------AGGATCATGATGGGCTCCTCGGTGT 	1
---------------------------------------------------------------------------GATCATGATGGGCTCCTCGGTGT 	12
---------------------------------------------------------------------------GATCATGATGGGCTCCTCGGTG 	2
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTGTT 	46
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTGT 	1148
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTG 	78
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGT 	62
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGG 	38
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGTGT 	103
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGTG 	18
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGT 	5
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGTGTT 	3
-------------------------------------------------------------------------------ATGATGGGCTCCTCGGTGT 	7

Overlaps with: MNEST030375
Overlaps with miRBase pre-miRNAs: cfa-mir-433 ppy-mir-433 rno-mir-433 hsa-mir-433 ggo-mir-433 ptr-mir-433
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Homo sapiens	GSM494811_K562	ATCATGATGGGCTCCTCGGTGT	AGTACGGTGAGCCTGTCATTATTC	down	5	0

Secondary structure

GAAGACCCAATGCCCGGGGAGAAGTACGGTGAGCCTGTCATTATTCAGAGAGGCTAGATCCTCTGTGTTGAGAAGGATCATGATGGGCTCCTCGGTGTTCTCCAGGTAGCGGCACCA
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTGT 	24
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTGTT 	2
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGTGT 	2

Overlaps with: MNEST030375
Overlaps with miRBase pre-miRNAs: cfa-mir-433 ppy-mir-433 rno-mir-433 hsa-mir-433 ggo-mir-433 ptr-mir-433
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Homo sapiens	GSM531978	ATCATGATGGGCTCCTCGGTGT	AGTACGGTGAGCCTGTCATTATTC	down	5	0

Secondary structure

GAAGACCCAATGCCCGGGGAGAAGTACGGTGAGCCTGTCATTATTCAGAGAGGCTAGATCCTCTGTGTTGAGAAGGATCATGATGGGCTCCTCGGTGTTCTCCAGGTAGCGGCACCA
------------------------TACGGTGAGCCTGTCATTATTC 	1
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTGTT 	14
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTGT 	196
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTG 	15
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGG 	6
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGTGT 	14
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGTG 	5
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGTGTT 	2
-------------------------------------------------------------------------------ATGATGGGCTCCTCGGTGT 	5

Overlaps with: MNEST030375
Overlaps with miRBase pre-miRNAs: cfa-mir-433 ppy-mir-433 rno-mir-433 hsa-mir-433 ggo-mir-433 ptr-mir-433
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Homo sapiens	GSM651907	ATCATGATGGGCTCCTCGGTGT	AGTACGGTGAGCCTGTCATTATTC	down	5	0

Secondary structure

GAAGACCCAATGCCCGGGGAGAAGTACGGTGAGCCTGTCATTATTCAGAGAGGCTAGATCCTCTGTGTTGAGAAGGATCATGATGGGCTCCTCGGTGTTCTCCAGGTAGCGGCACCA
------------------------TACGGTGAGCCTGTCATTATTC 	11
------------------------TACGGTGAGCCTGTCATTATT 	13
------------------------TACGGTGAGCCTGTCATTAT 	2
---------------------------------------------------------------------------GATCATGATGGGCTCCTCGGTGT 	2
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTGTT 	38
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTGT 	635
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTG 	68
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGT 	17
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGG 	26
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGTGT 	54
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGTG 	27
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGT 	8
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGTGTT 	2
-------------------------------------------------------------------------------ATGATGGGCTCCTCGGTGT 	12

Overlaps with: MNEST030375
Overlaps with miRBase pre-miRNAs: cfa-mir-433 ppy-mir-433 rno-mir-433 hsa-mir-433 ggo-mir-433 ptr-mir-433
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Homo sapiens	GSM494812_HL60	ATCATGATGGGCTCCTCGGTGT	AGTACGGTGAGCCTGTCATTATTC	down	5	0

Secondary structure

GAAGACCCAATGCCCGGGGAGAAGTACGGTGAGCCTGTCATTATTCAGAGAGGCTAGATCCTCTGTGTTGAGAAGGATCATGATGGGCTCCTCGGTGTTCTCCAGGTAGCGGCACCA
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTGT 	7
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTGTT 	1

Overlaps with: MNEST030375
Overlaps with miRBase pre-miRNAs: cfa-mir-433 ppy-mir-433 rno-mir-433 hsa-mir-433 ggo-mir-433 ptr-mir-433
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Homo sapiens	GSM531986-13294	ATCATGATGGGCTCCTCGGTGT	AGTACGGTGAGCCTGTCATTATTC	down	5	0

Secondary structure

GAAGACCCAATGCCCGGGGAGAAGTACGGTGAGCCTGTCATTATTCAGAGAGGCTAGATCCTCTGTGTTGAGAAGGATCATGATGGGCTCCTCGGTGTTCTCCAGGTAGCGGCACCA
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTGT 	8
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGG 	3
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGT 	2
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTG 	1
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGTGT 	1

Overlaps with: MNEST030375
Overlaps with miRBase pre-miRNAs: cfa-mir-433 ppy-mir-433 rno-mir-433 hsa-mir-433 ggo-mir-433 ptr-mir-433
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Homo sapiens	GSM531975	ATCATGATGGGCTCCTCGGTGT	AGTACGGTGAGCCTGTCATTATTC	down	5	0

Secondary structure

GAAGACCCAATGCCCGGGGAGAAGTACGGTGAGCCTGTCATTATTCAGAGAGGCTAGATCCTCTGTGTTGAGAAGGATCATGATGGGCTCCTCGGTGTTCTCCAGGTAGCGGCACCA
------------------------TACGGTGAGCCTGTCATTATT 	1
---------------------------------------------------------------------------GATCATGATGGGCTCCTCGGTGT 	1
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTGT 	42
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTGTT 	6
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGTG 	5
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGGT 	2
----------------------------------------------------------------------------ATCATGATGGGCTCCTCGG 	1
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGTGT 	2
-----------------------------------------------------------------------------TCATGATGGGCTCCTCGGT 	1
-------------------------------------------------------------------------------ATGATGGGCTCCTCGGTGT 	2

Overlaps with: MNEST030375
Overlaps with miRBase pre-miRNAs: cfa-mir-433 ppy-mir-433 rno-mir-433 hsa-mir-433 ggo-mir-433 ptr-mir-433
HuntMi prediction: true miRNA