miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: ATCGTAGAGGAAAATCCACGT

selected species: Mus musculus

12 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Mus musculus	GSM527274-2107	ATCGTAGAGGAAAATCCACGTT	GGTAGATTCTCCTTCTATGAGTA	down	4	1

Secondary structure

AGTTGTTCTTTGATATTTAAAAGGTAGATTCTCCTTCTATGAGTACAATATTAATGACTAATCGTAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGCT
----GTTCTTTGATATTTAAAAG 	1
---------------------AGGTAGATTCTCCTTCTATGAG 	3
---------------------AGGTAGATTCTCCTTCTATG 	1
---------------------AGGTAGATTCTCCTTCTATGAGT 	6
----------------------GGTAGATTCTCCTTCTATGAGTA 	14
----------------------GGTAGATTCTCCTTCTATGA 	1
----------------------GGTAGATTCTCCTTCTATGAGT 	322
----------------------GGTAGATTCTCCTTCTATGAG 	18
----------------------GGTAGATTCTCCTTCTATG 	10
----------------------GGTAGATTCTCCTTCTATGAGTAC 	1
-----------------------GTAGATTCTCCTTCTATGAGTAC 	53
-----------------------GTAGATTCTCCTTCTATGAGTA 	129
-----------------------GTAGATTCTCCTTCTATGAGTACA 	2
-----------------------GTAGATTCTCCTTCTATGAG 	49
-----------------------GTAGATTCTCCTTCTATGAGT 	837
-----------------------GTAGATTCTCCTTCTATGA 	2
------------------------TAGATTCTCCTTCTATGAGTAC 	15
------------------------TAGATTCTCCTTCTATGAGTACA 	1
------------------------TAGATTCTCCTTCTATGAGT 	3
------------------------TAGATTCTCCTTCTATGAGTA 	1
----------------------------------------------AATATTAATGACTAATCGTAGAG 	2
----------------------------------------------AATATTAATGACTAATCGTAGAGG 	9
-------------------------------------------------------GACTAATCGTAGAGGAAAATCCACGT 	1
-----------------------------------------------------------AATCGTAGAGGAAAATCCAC 	1
-----------------------------------------------------------AATCGTAGAGGAAAATCCACG 	2
-----------------------------------------------------------AATCGTAGAGGAAAATCCACGT 	7
------------------------------------------------------------ATCGTAGAGGAAAATCCACGTT 	1210
------------------------------------------------------------ATCGTAGAGGAAAATCCACG 	28
------------------------------------------------------------ATCGTAGAGGAAAATCCACGT 	881
------------------------------------------------------------ATCGTAGAGGAAAATCCAC 	19
------------------------------------------------------------ATCGTAGAGGAAAATCCACGTTT 	14
------------------------------------------------------------ATCGTAGAGGAAAATCCACGTTTT 	1
-------------------------------------------------------------TCGTAGAGGAAAATCCACGTTT 	5
-------------------------------------------------------------TCGTAGAGGAAAATCCACG 	1
-------------------------------------------------------------TCGTAGAGGAAAATCCACGTTTT 	1
--------------------------------------------------------------CGTAGAGGAAAATCCACGT 	14
--------------------------------------------------------------CGTAGAGGAAAATCCACGTT 	1
---------------------------------------------------------------GTAGAGGAAAATCCACGTT 	85
---------------------------------------------------------------GTAGAGGAAAATCCACGTTT 	9
---------------------------------------------------------------GTAGAGGAAAATCCACGTTTT 	40

Overlaps with: MNEST033097
Overlaps with miRBase pre-miRNAs: mmu-mir-376a rno-mir-376a rno-mir-3595
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Mus musculus	GSM527280	ATCGTAGAGGAAAATCCACGTT	GGTAGATTCTCCTTCTATGAGTA	down	4	1

Secondary structure

AGTTGTTCTTTGATATTTAAAAGGTAGATTCTCCTTCTATGAGTACAATATTAATGACTAATCGTAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGCT
--------------------AAGGTAGATTCTCCTTCTATG 	1
---------------------AGGTAGATTCTCCTTCTATGAGT 	9
---------------------AGGTAGATTCTCCTTCTATGAG 	1
----------------------GGTAGATTCTCCTTCTATGAG 	9
----------------------GGTAGATTCTCCTTCTATGAGTA 	2
----------------------GGTAGATTCTCCTTCTATG 	8
----------------------GGTAGATTCTCCTTCTATGAGT 	130
-----------------------GTAGATTCTCCTTCTATGAGT 	327
-----------------------GTAGATTCTCCTTCTATGAG 	21
-----------------------GTAGATTCTCCTTCTATGAGTA 	43
-----------------------GTAGATTCTCCTTCTATGAGTAC 	20
-----------------------GTAGATTCTCCTTCTATGA 	2
------------------------TAGATTCTCCTTCTATGAGTA 	2
------------------------TAGATTCTCCTTCTATGAGTAC 	11
------------------------TAGATTCTCCTTCTATGAGT 	2
----------------------------------------------AATATTAATGACTAATCGTAGAGG 	2
--------------------------------------------------------ACTAATCGTAGAGGAAAATCCACG 	1
-----------------------------------------------------------AATCGTAGAGGAAAATCCACGTT 	1
-----------------------------------------------------------AATCGTAGAGGAAAATCCACG 	1
-----------------------------------------------------------AATCGTAGAGGAAAATCCACGT 	2
------------------------------------------------------------ATCGTAGAGGAAAATCCAC 	6
------------------------------------------------------------ATCGTAGAGGAAAATCCACGTT 	491
------------------------------------------------------------ATCGTAGAGGAAAATCCACGTTT 	3
------------------------------------------------------------ATCGTAGAGGAAAATCCACG 	14
------------------------------------------------------------ATCGTAGAGGAAAATCCACGT 	378
-------------------------------------------------------------TCGTAGAGGAAAATCCACGTTT 	2
-------------------------------------------------------------TCGTAGAGGAAAATCCACGTT 	2
--------------------------------------------------------------CGTAGAGGAAAATCCACGT 	9
--------------------------------------------------------------CGTAGAGGAAAATCCACGTTTT 	1
---------------------------------------------------------------GTAGAGGAAAATCCACGTTTT 	20
---------------------------------------------------------------GTAGAGGAAAATCCACGTT 	43
---------------------------------------------------------------GTAGAGGAAAATCCACGTTT 	1

Overlaps with: MNEST033097
Overlaps with miRBase pre-miRNAs: mmu-mir-376a rno-mir-376a rno-mir-3595
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Mus musculus	GSM539877-5198	ATCGTAGAGGAAAATCCACGT	GTAGATTCTCCTTCTATGAGTA	down	4	1

Secondary structure

GTTGTTCTTTGATATTTAAAAGGTAGATTCTCCTTCTATGAGTACAATATTAATGACTAATCGTAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGC
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGTT 	2
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGT 	9
-----------------------------------------------------------ATCGTAGAGGAAAATCCACG 	1
-----------------------------------------------------------ATCGTAGAGGAAAATCCAC 	1

Overlaps with: MNEST033097
Overlaps with miRBase pre-miRNAs: mmu-mir-376a rno-mir-376a rno-mir-3595
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Mus musculus	GSM539855	ATCGTAGAGGAAAATCCACGT	GTAGATTCTCCTTCTATGAGTA	down	4	1

Secondary structure

GTTGTTCTTTGATATTTAAAAGGTAGATTCTCCTTCTATGAGTACAATATTAATGACTAATCGTAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGC
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGT 	42
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGTTT 	1
-----------------------------------------------------------ATCGTAGAGGAAAATCCACG 	4
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGTT 	6
--------------------------------------------------------------GTAGAGGAAAATCCACGTT 	1

Overlaps with: MNEST033097
Overlaps with miRBase pre-miRNAs: mmu-mir-376a rno-mir-376a rno-mir-3595
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Mus musculus	GSM527276	ATCGTAGAGGAAAATCCACGTT	GGTAGATTCTCCTTCTATGAGTA	down	4	1

Secondary structure

AGTTGTTCTTTGATATTTAAAAGGTAGATTCTCCTTCTATGAGTACAATATTAATGACTAATCGTAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGCT
-------------------AAAGGTAGATTCTCCTTCTATGAGT 	1
---------------------AGGTAGATTCTCCTTCTATGAG 	2
---------------------AGGTAGATTCTCCTTCTATGAGT 	9
---------------------AGGTAGATTCTCCTTCTATG 	1
----------------------GGTAGATTCTCCTTCTATGAG 	14
----------------------GGTAGATTCTCCTTCTATGAGTA 	18
----------------------GGTAGATTCTCCTTCTATGA 	3
----------------------GGTAGATTCTCCTTCTATG 	7
----------------------GGTAGATTCTCCTTCTATGAGT 	243
-----------------------GTAGATTCTCCTTCTATGAGT 	812
-----------------------GTAGATTCTCCTTCTATGAG 	35
-----------------------GTAGATTCTCCTTCTATGAGTA 	153
-----------------------GTAGATTCTCCTTCTATGAGTAC 	64
------------------------TAGATTCTCCTTCTATGAGTAC 	14
------------------------TAGATTCTCCTTCTATGAGTA 	1
------------------------TAGATTCTCCTTCTATGAGT 	2
------------------------TAGATTCTCCTTCTATGAGTACA 	2
-------------------------AGATTCTCCTTCTATGAGTAC 	1
---------------------------ATTCTCCTTCTATGAGTAC 	2
----------------------------------------------AATATTAATGACTAATCGTAGAGG 	7
----------------------------------------------AATATTAATGACTAATCGTAGAGGA 	2
-----------------------------------------------------------AATCGTAGAGGAAAATCCACGTT 	2
-----------------------------------------------------------AATCGTAGAGGAAAATCCACG 	1
-----------------------------------------------------------AATCGTAGAGGAAAATCCAC 	1
-----------------------------------------------------------AATCGTAGAGGAAAATCCACGT 	9
------------------------------------------------------------ATCGTAGAGGAAAATCCAC 	14
------------------------------------------------------------ATCGTAGAGGAAAATCCACGTT 	1231
------------------------------------------------------------ATCGTAGAGGAAAATCCACGTTT 	12
------------------------------------------------------------ATCGTAGAGGAAAATCCACGTTTT 	2
------------------------------------------------------------ATCGTAGAGGAAAATCCACG 	30
------------------------------------------------------------ATCGTAGAGGAAAATCCACGT 	894
-------------------------------------------------------------TCGTAGAGGAAAATCCACGTTT 	4
-------------------------------------------------------------TCGTAGAGGAAAATCCACGTT 	1
-------------------------------------------------------------TCGTAGAGGAAAATCCACGT 	1
--------------------------------------------------------------CGTAGAGGAAAATCCACGTT 	2
--------------------------------------------------------------CGTAGAGGAAAATCCACGT 	18
---------------------------------------------------------------GTAGAGGAAAATCCACGTTTT 	46
---------------------------------------------------------------GTAGAGGAAAATCCACGTT 	81
---------------------------------------------------------------GTAGAGGAAAATCCACGTTT 	7

Overlaps with: MNEST033097
Overlaps with miRBase pre-miRNAs: mmu-mir-376a rno-mir-376a rno-mir-3595
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Mus musculus	GSM539869	ATCGTAGAGGAAAATCCACGT	GTAGATTCTCCTTCTATGAGTA	down	4	1

Secondary structure

GTTGTTCTTTGATATTTAAAAGGTAGATTCTCCTTCTATGAGTACAATATTAATGACTAATCGTAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGC
--------------------AGGTAGATTCTCCTTCTATG 	1
--------------------AGGTAGATTCTCCTTCTAT 	1
---------------------------------------------AATATTAATGACTAATCGTAGAG 	1
-------------------------------------------------------ACTAATCGTAGAGGAAAATCCA 	1
----------------------------------------------------------AATCGTAGAGGAAAATCCACGTT 	1
----------------------------------------------------------AATCGTAGAGGAAAATCCACGT 	3
-----------------------------------------------------------ATCGTAGAGGAAAATCCACG 	39
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGTTTTC 	6
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGTTTT 	4
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGTTT 	40
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGTT 	299
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGT 	1382
-----------------------------------------------------------ATCGTAGAGGAAAATCCAC 	50
------------------------------------------------------------TCGTAGAGGAAAATCCACGTTTTC 	1
------------------------------------------------------------TCGTAGAGGAAAATCCACGTTT 	9
--------------------------------------------------------------GTAGAGGAAAATCCACGTT 	1

Overlaps with: MNEST033097
Overlaps with miRBase pre-miRNAs: mmu-mir-376a rno-mir-376a rno-mir-3595
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Mus musculus	GSM539848	ATCGTAGAGGAAAATCCACGT	GTAGATTCTCCTTCTATGAGTA	down	4	1

Secondary structure

GTTGTTCTTTGATATTTAAAAGGTAGATTCTCCTTCTATGAGTACAATATTAATGACTAATCGTAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGC
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGTT 	1
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGT 	6

Overlaps with: MNEST033097
Overlaps with miRBase pre-miRNAs: mmu-mir-376a rno-mir-376a rno-mir-3595
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Mus musculus	GSM539878	ATCGTAGAGGAAAATCCACGT	GTAGATTCTCCTTCTATGAGTA	down	4	1

Secondary structure

GTTGTTCTTTGATATTTAAAAGGTAGATTCTCCTTCTATGAGTACAATATTAATGACTAATCGTAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGC
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGTT 	4
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGT 	23
-----------------------------------------------------------ATCGTAGAGGAAAATCCACG 	3

Overlaps with: MNEST033097
Overlaps with miRBase pre-miRNAs: mmu-mir-376a rno-mir-376a rno-mir-3595
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Mus musculus	GSM539873	ATCGTAGAGGAAAATCCACGT	GTAGATTCTCCTTCTATGAGTA	down	4	1

Secondary structure

GTTGTTCTTTGATATTTAAAAGGTAGATTCTCCTTCTATGAGTACAATATTAATGACTAATCGTAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGC
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGTTT 	1
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGTT 	10
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGT 	72
-----------------------------------------------------------ATCGTAGAGGAAAATCCACG 	6
-----------------------------------------------------------ATCGTAGAGGAAAATCCAC 	9
--------------------------------------------------------------GTAGAGGAAAATCCACGTT 	1

Overlaps with: MNEST033097
Overlaps with miRBase pre-miRNAs: mmu-mir-376a rno-mir-376a rno-mir-3595
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Mus musculus	GSM539867	ATCGTAGAGGAAAATCCACGT	GTAGATTCTCCTTCTATGAGTA	down	4	1

Secondary structure

GTTGTTCTTTGATATTTAAAAGGTAGATTCTCCTTCTATGAGTACAATATTAATGACTAATCGTAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGC
--------------------AGGTAGATTCTCCTTCTATGAGT 	4
--------------------AGGTAGATTCTCCTTCTATGAG 	1
---------------------GGTAGATTCTCCTTCTATGAGT 	3
---------------------GGTAGATTCTCCTTCTATGAGTA 	1
---------------------GGTAGATTCTCCTTCTATGAG 	1
---------------------GGTAGATTCTCCTTCTATGA 	1
----------------------GTAGATTCTCCTTCTATGAGTA 	1
----------------------------------------------------------AATCGTAGAGGAAAATCCACGTT 	2
----------------------------------------------------------AATCGTAGAGGAAAATCCACGT 	7
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGTT 	120
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGT 	888
-----------------------------------------------------------ATCGTAGAGGAAAATCCAC 	29
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGTTTT 	4
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGTTT 	24
-----------------------------------------------------------ATCGTAGAGGAAAATCCACG 	46
--------------------------------------------------------------GTAGAGGAAAATCCACGTT 	3

Overlaps with: MNEST033097
Overlaps with miRBase pre-miRNAs: mmu-mir-376a rno-mir-376a rno-mir-3595
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Mus musculus	GSM539854	ATCGTAGAGGAAAATCCACGT	GTAGATTCTCCTTCTATGAGTA	down	4	1

Secondary structure

GTTGTTCTTTGATATTTAAAAGGTAGATTCTCCTTCTATGAGTACAATATTAATGACTAATCGTAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGC
---------------------GGTAGATTCTCCTTCTATGAGTA 	2
----------------------------------------------------------AATCGTAGAGGAAAATCCACGT 	3
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGTTTTC 	1
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGTTT 	6
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGTT 	38
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGT 	237
-----------------------------------------------------------ATCGTAGAGGAAAATCCACG 	11
-----------------------------------------------------------ATCGTAGAGGAAAATCCAC 	30
-----------------------------------------------------------ATCGTAGAGGAAAATCCACGTTTT 	1
--------------------------------------------------------------GTAGAGGAAAATCCACGTT 	1

Overlaps with: MNEST033097
Overlaps with miRBase pre-miRNAs: mmu-mir-376a rno-mir-376a rno-mir-3595
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Mus musculus	GSM527279-2112	ATCGTAGAGGAAAATCCACGTT	GGTAGATTCTCCTTCTATGAGTA	down	4	1

Secondary structure

AGTTGTTCTTTGATATTTAAAAGGTAGATTCTCCTTCTATGAGTACAATATTAATGACTAATCGTAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGCT
--TTGTTCTTTGATATTTAAAAG 	1
---TGTTCTTTGATATTTAAAAG 	1
--------------------AAGGTAGATTCTCCTTCTATG 	1
---------------------AGGTAGATTCTCCTTCTATGAG 	4
---------------------AGGTAGATTCTCCTTCTATG 	3
---------------------AGGTAGATTCTCCTTCTATGAGT 	20
---------------------AGGTAGATTCTCCTTCTATGAGTA 	1
----------------------GGTAGATTCTCCTTCTATGAGTA 	26
----------------------GGTAGATTCTCCTTCTATGA 	12
----------------------GGTAGATTCTCCTTCTATGAGT 	579
----------------------GGTAGATTCTCCTTCTATGAG 	44
----------------------GGTAGATTCTCCTTCTATG 	17
----------------------GGTAGATTCTCCTTCTATGAGTAC 	6
-----------------------GTAGATTCTCCTTCTATGAGTAC 	124
-----------------------GTAGATTCTCCTTCTATGAGTA 	276
-----------------------GTAGATTCTCCTTCTATGAGTACA 	3
-----------------------GTAGATTCTCCTTCTATGAG 	91
-----------------------GTAGATTCTCCTTCTATGAGT 	1342
-----------------------GTAGATTCTCCTTCTATGA 	11
------------------------TAGATTCTCCTTCTATGAGTAC 	38
------------------------TAGATTCTCCTTCTATGAG 	1
------------------------TAGATTCTCCTTCTATGAGT 	27
------------------------TAGATTCTCCTTCTATGAGTA 	2
-------------------------AGATTCTCCTTCTATGAGT 	1
-------------------------AGATTCTCCTTCTATGAGTAC 	1
--------------------------GATTCTCCTTCTATGAGTAC 	2
----------------------------------------------AATATTAATGACTAATCGTAGA 	1
----------------------------------------------AATATTAATGACTAATCGTAGAGGA 	4
----------------------------------------------AATATTAATGACTAATCGTAGAG 	4
----------------------------------------------AATATTAATGACTAATCGTAG 	1
----------------------------------------------AATATTAATGACTAATCGTAGAGG 	23
-----------------------------------------------------------AATCGTAGAGGAAAATCCAC 	1
-----------------------------------------------------------AATCGTAGAGGAAAATCCACG 	6
-----------------------------------------------------------AATCGTAGAGGAAAATCCACGT 	10
-----------------------------------------------------------AATCGTAGAGGAAAATCCACGTT 	2
------------------------------------------------------------ATCGTAGAGGAAAATCCACGTT 	2293
------------------------------------------------------------ATCGTAGAGGAAAATCCACGT 	1520
------------------------------------------------------------ATCGTAGAGGAAAATCCACG 	67
------------------------------------------------------------ATCGTAGAGGAAAATCCAC 	26
------------------------------------------------------------ATCGTAGAGGAAAATCCACGTTT 	28
------------------------------------------------------------ATCGTAGAGGAAAATCCACGTTTT 	8
-------------------------------------------------------------TCGTAGAGGAAAATCCACGTT 	4
-------------------------------------------------------------TCGTAGAGGAAAATCCACGTTT 	14
-------------------------------------------------------------TCGTAGAGGAAAATCCACGTTTT 	2
--------------------------------------------------------------CGTAGAGGAAAATCCACGT 	10
--------------------------------------------------------------CGTAGAGGAAAATCCACGTT 	8
--------------------------------------------------------------CGTAGAGGAAAATCCACGTTT 	1
---------------------------------------------------------------GTAGAGGAAAATCCACGTTTTC 	1
---------------------------------------------------------------GTAGAGGAAAATCCACGTT 	108
---------------------------------------------------------------GTAGAGGAAAATCCACGTTT 	6
---------------------------------------------------------------GTAGAGGAAAATCCACGTTTT 	59
----------------------------------------------------------------TAGAGGAAAATCCACGTTT 	1

Overlaps with: MNEST033097
Overlaps with miRBase pre-miRNAs: mmu-mir-376a rno-mir-376a rno-mir-3595
HuntMi prediction: true miRNA