miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: ATCGTGCCAAGCTTTGTGCTTT

selected species: Physcomitrella patens



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 ATCGTGCCAAGCTTTGTGCTTT CGCCAATGCTTGGCATGAATG down 3 1


Secondary structure

TTTCTTGTTCGACCATTGCAGTTGCTTTTAGACGCCAATGCTTGGCATGAATGTCTTGAGTGTCTGGTAGCCTAAAACAGAGAGATGATGCAATTGGTATGTGGATCTTCTCTGGTTTTAGAGGAATCGTTCGCTGGCCTCCAGGTTCGAGACAATCGTGCCAAGCTTTGTGCTTTCAAGAGCCTTAATGGTTTTGGACGATGGG
--------------------------------CGCCAATGCTTGGCATGAAT 	23
--------------------------------CGCCAATGCTTGGCATGAATG 	1
-----------------------------------------TTGGCATGAATGTCTTGAGTGTC 	1
-----------------------------------------TTGGCATGAATGTCTTGAGTGT 	3
-----------------------------------------TTGGCATGAATGTCTTGAGTGTCT 	3
------------------------------------------TGGCATGAATGTCTTGAGTGTC 	2
----------------------------------------------------------------------------------------------------------------------------------------------AGGTTCGAGACAATCGTGCCAAGC 	5
----------------------------------------------------------------------------------------------------------------------------------------------AGGTTCGAGACAATCGTGCCAAG 	1
-------------------------------------------------------------------------------------------------------------------------------------------------TTCGAGACAATCGTGCCAAGC 	13
---------------------------------------------------------------------------------------------------------------------------------------------------------AATCGTGCCAAGCTTTGTGCTTT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGTGCCAAGCTTTGTGCTT 	7
----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGTGCCAAGCTTTGTGCT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGTGCCAAGCTTTGTGCTTT 	96
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGTGCCAAGCTTTGTGCTT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGTGCCAAGCTTTGTGCTTT 	9


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115095 ATCGTGCCAAGCTTTGTGCTTT CGCCAATGCTTGGCATGAATG down 3 1


Secondary structure

TTTCTTGTTCGACCATTGCAGTTGCTTTTAGACGCCAATGCTTGGCATGAATGTCTTGAGTGTCTGGTAGCCTAAAACAGAGAGATGATGCAATTGGTATGTGGATCTTCTCTGGTTTTAGAGGAATCGTTCGCTGGCCTCCAGGTTCGAGACAATCGTGCCAAGCTTTGTGCTTTCAAGAGCCTTAATGGTTTTGGACGATGGG
--------------------------------CGCCAATGCTTGGCATGAAT 	1
--------------------------------CGCCAATGCTTGGCATGAATG 	7
-----------------------------------------TTGGCATGAATGTCTTGAGTGT 	1
-----------------------------------------TTGGCATGAATGTCTTGAGTGTCT 	2
------------------------------------------TGGCATGAATGTCTTGAGTGTCTGG 	2
------------------------------------------TGGCATGAATGTCTTGAGTG 	1
----------------------------------------------------------------------------------------------------------------------------------------------AGGTTCGAGACAATCGTGCCAAGC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGTGCCAAGCTTTGTGCTTT 	38
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGTGCCAAGCTTTGTGCTTT 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM313215 ATCGTGCCAAGCTTTGTGCTTT CGCCAATGCTTGGCATGAATG down 3 1


Secondary structure

TTTCTTGTTCGACCATTGCAGTTGCTTTTAGACGCCAATGCTTGGCATGAATGTCTTGAGTGTCTGGTAGCCTAAAACAGAGAGATGATGCAATTGGTATGTGGATCTTCTCTGGTTTTAGAGGAATCGTTCGCTGGCCTCCAGGTTCGAGACAATCGTGCCAAGCTTTGTGCTTTCAAGAGCCTTAATGGTTTTGGACGATGGG
--------------------------------CGCCAATGCTTGGCATGAATG 	34
--------------------------------CGCCAATGCTTGGCATGAATGT 	6
--------------------------------CGCCAATGCTTGGCATGAAT 	15
---------------------------------GCCAATGCTTGGCATGAAT 	1
-----------------------------------------TTGGCATGAATGTCTTGAGTGTC 	4
-----------------------------------------TTGGCATGAATGTCTTGAGTGTCTG 	2
-----------------------------------------TTGGCATGAATGTCTTGAGTG 	4
-----------------------------------------TTGGCATGAATGTCTTGAGT 	3
-----------------------------------------TTGGCATGAATGTCTTGAGTGT 	1
------------------------------------------TGGCATGAATGTCTTGAGTGTC 	8
------------------------------------------TGGCATGAATGTCTTGAGT 	1
------------------------------------------TGGCATGAATGTCTTGAGTGT 	1
------------------------------------------TGGCATGAATGTCTTGAGTG 	2
-----------------------------------------------------------------------------------GATGATGCAATTGGTATGTGGATCTT 	1
---------------------------------------------------------------------------------------------------TGTGGATCTTCTCTGGTTTTA 	1
------------------------------------------------------------------------------------------------------------TCTCTGGTTTTAGAGGAATCGTTCGC 	1
-------------------------------------------------------------------------------------------------------------------------------------CTGGCCTCCAGGTTCGAGAC 	1
-------------------------------------------------------------------------------------------------------------------------------------------TCCAGGTTCGAGACAATCGTG 	1
--------------------------------------------------------------------------------------------------------------------------------------------CCAGGTTCGAGACAATCGTGCCAAGC 	1
------------------------------------------------------------------------------------------------------------------------------------------------GTTCGAGACAATCGTGCCAAGC 	2
------------------------------------------------------------------------------------------------------------------------------------------------GTTCGAGACAATCGTGCCAAG 	2
-------------------------------------------------------------------------------------------------------------------------------------------------TTCGAGACAATCGTGCCAAGC 	30
----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGTGCCAAGCTTTGTGCTTT 	132
----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGTGCCAAGCTTTGTGCTT 	23
----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGTGCCAAGCTTTGTGCT 	4
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGTGCCAAGCTTTGTGCTTT 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGTGCCAAGCTTTGTGCTT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCCAAGCTTTGTGCTTT 	5


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM115096 ATCGTGCCAAGCTTTGTGCTTT CGCCAATGCTTGGCATGAATG down 3 1


Secondary structure

TTTCTTGTTCGACCATTGCAGTTGCTTTTAGACGCCAATGCTTGGCATGAATGTCTTGAGTGTCTGGTAGCCTAAAACAGAGAGATGATGCAATTGGTATGTGGATCTTCTCTGGTTTTAGAGGAATCGTTCGCTGGCCTCCAGGTTCGAGACAATCGTGCCAAGCTTTGTGCTTTCAAGAGCCTTAATGGTTTTGGACGATGGG
--------------------------------CGCCAATGCTTGGCATGAATGT 	4
--------------------------------CGCCAATGCTTGGCATGAAT 	31
--------------------------------CGCCAATGCTTGGCATGAATG 	15
-----------------------------------------TTGGCATGAATGTCTTGAGTGT 	3
-----------------------------------------TTGGCATGAATGTCTTGAGTGTCTGG 	4
-----------------------------------------TTGGCATGAATGTCTTGAGTGTCTG 	1
-----------------------------------------TTGGCATGAATGTCTTGAGTGTCT 	2
-----------------------------------------TTGGCATGAATGTCTTGAGTGTC 	3
------------------------------------------TGGCATGAATGTCTTGAGTGTC 	4
------------------------------------------TGGCATGAATGTCTTGAGTGT 	4
------------------------------------------TGGCATGAATGTCTTGAGTG 	1
------------------------------------------TGGCATGAATGTCTTGAGTGTCT 	3
----------------------------------------------------------------------------------------------------------------------------------------------AGGTTCGAGACAATCGTGCCAAGC 	7
----------------------------------------------------------------------------------------------------------------------------------------------AGGTTCGAGACAATCGTGCCAAG 	1
-------------------------------------------------------------------------------------------------------------------------------------------------TTCGAGACAATCGTGCCAAGC 	4
-------------------------------------------------------------------------------------------------------------------------------------------------------ACAATCGTGCCAAGCTTTGTGCTTT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------AATCGTGCCAAGCTTTGTGCTTT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGTGCCAAGCTTTGTGCTT 	4
----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGTGCCAAGCTTTGTGCTTTC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGTGCCAAGCTTTGTGCTTT 	122
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGTGCCAAGCTTTGTGCTTT 	6
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGTGCCAAGCTTTGTGCT 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------CGTGCCAAGCTTTGTGCTTT 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM313214 ATCGTGCCAAGCTTTGTGCTTT CGCCAATGCTTGGCATGAATG down 3 1


Secondary structure

TTTCTTGTTCGACCATTGCAGTTGCTTTTAGACGCCAATGCTTGGCATGAATGTCTTGAGTGTCTGGTAGCCTAAAACAGAGAGATGATGCAATTGGTATGTGGATCTTCTCTGGTTTTAGAGGAATCGTTCGCTGGCCTCCAGGTTCGAGACAATCGTGCCAAGCTTTGTGCTTTCAAGAGCCTTAATGGTTTTGGACGATGGG
--------------------------------CGCCAATGCTTGGCATGAA 	1
--------------------------------CGCCAATGCTTGGCATGAAT 	50
--------------------------------CGCCAATGCTTGGCATGAATGT 	4
--------------------------------CGCCAATGCTTGGCATGAATGTC 	1
--------------------------------CGCCAATGCTTGGCATGAATG 	19
-----------------------------------------TTGGCATGAATGTCTTGAGTGTC 	5
-----------------------------------------TTGGCATGAATGTCTTGAGTGTCT 	1
-----------------------------------------TTGGCATGAATGTCTTGAGTGTCTG 	2
-----------------------------------------TTGGCATGAATGTCTTGAGTG 	3
-----------------------------------------TTGGCATGAATGTCTTGAGTGT 	1
-----------------------------------------TTGGCATGAATGTCTTGAG 	3
-----------------------------------------TTGGCATGAATGTCTTGAGT 	4
------------------------------------------TGGCATGAATGTCTTGAGTGTC 	2
------------------------------------------TGGCATGAATGTCTTGAGT 	1
------------------------------------------TGGCATGAATGTCTTGAGTGTCT 	1
------------------------------------------TGGCATGAATGTCTTGAGTGTCTG 	1
------------------------------------------TGGCATGAATGTCTTGAGTGTCTGGT 	1
------------------------------------------TGGCATGAATGTCTTGAGTGT 	1
------------------------------------------------------------------------------------ATGATGCAATTGGTATGTGGATC 	2
---------------------------------------------------------------------------------------------------TGTGGATCTTCTCTGGTTTTA 	1
------------------------------------------------------------------------------------------------------------------------GAGGAATCGTTCGCTGGCCTC 	1
------------------------------------------------------------------------------------------------------------------------------------------------GTTCGAGACAATCGTGCCAAGCTT 	1
------------------------------------------------------------------------------------------------------------------------------------------------GTTCGAGACAATCGTGCCAA 	1
------------------------------------------------------------------------------------------------------------------------------------------------GTTCGAGACAATCGTGCCAAGC 	2
------------------------------------------------------------------------------------------------------------------------------------------------GTTCGAGACAATCGTGCCAAG 	3
-------------------------------------------------------------------------------------------------------------------------------------------------TTCGAGACAATCGTGCCAAGC 	17
--------------------------------------------------------------------------------------------------------------------------------------------------TCGAGACAATCGTGCCAAGC 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------ACAATCGTGCCAAGCTTTGTGC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGTGCCAAGCTTTGTGCTT 	14
----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGTGCCAAGCTTTGTGCTTT 	92
----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGTGCCAAGCTTTGTGCT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGTGCCAAGCTTTGTGCTTTC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------TCGTGCCAAGCTTTGTGCTTT 	9
-------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCCAAGCTTTGTGCTTT 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCCAAGCTTTGTGCTTTC 	1


HuntMi prediction: true miRNA