miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: ATGAATATGGGAAATGTTAGAA

selected species: Oryza sativa



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM686039-31370 ATGAATATGGGAAATGTTAGAA TTAGCATTTCCCACATTTATAT down 1 0


Secondary structure

TCATTACCATGCTACTCCCTCCGTTTCACAATGTAAATCATTTTAGCATTTCCCACATTTATATTTATGATTTTATATAGATTCATTAACATCACTATGAATATGGGAAATGTTAGAATGACTTATATTATAAAACGAAGGAAGTAGTAAATTTAAA
--------------------------------------------------------------------------ATATAGATTCATTAACATCA 	1
--------------------------------------------------------------------------ATATAGATTCATTAACATC 	1
------------------------------------------------------------------------------------ATTAACATCACTATGAATATGGGA 	1
-----------------------------------------------------------------------------------------------TATGAATATGGGAAATGTTAGAAT 	3
-----------------------------------------------------------------------------------------------TATGAATATGGGAAATGTTAGAA 	1
-----------------------------------------------------------------------------------------------TATGAATATGGGAAATGTTAG 	1
------------------------------------------------------------------------------------------------ATGAATATGGGAAATGTTAGAATG 	1
------------------------------------------------------------------------------------------------ATGAATATGGGAAATGTTAGAAT 	1
------------------------------------------------------------------------------------------------ATGAATATGGGAAATGTTAGAA 	5
------------------------------------------------------------------------------------------------ATGAATATGGGAAATGTTAGA 	1
------------------------------------------------------------------------------------------------ATGAATATGGGAAATGTTA 	1
----------------------------------------------------------------------------------------------------ATATGGGAAATGTTAGAATGACTTA 	1
--------------------------------------------------------------------------------------------------------GGGAAATGTTAGAATGACTTATAT 	1
--------------------------------------------------------------------------------------------------------GGGAAATGTTAGAATGACTT 	1
------------------------------------------------------------------------------------------------------------------AGAATGACTTATATTATAAAACGA 	1
---------------------------------------------------------------------------------------------------------------------ATGACTTATATTATAAAACG 	1


HuntMi prediction: true miRNA