miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions




selected mature miRNA sequence: ATGACCTATGAATTGACAGCC

selected species: Danio rerio



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540645 ATGACCTATGAATTGACAGCC CTGTCAGTTCTGTAGGCCACTG up 3 1


Secondary structure

AAGGCGCTTGCATGTTAGCGGAGAGCATGGTTAAGTCTAGGACACAGGGTGATGACCTATGAATTGACAGCCAGTGTTTGCAGTCCAGCTGCCTGTCAGTTCTGTAGGCCACTGCCCTGTTTATCCTACTAAACACACACTGATCTGCTTAGAGACTGCAGG
--------------------------------------------------GATGACCTATGAATTGACAGCC 	10
--------------------------------------------------GATGACCTATGAATTGACAGC 	3
---------------------------------------------------ATGACCTATGAATTGACAGCCA 	2067
---------------------------------------------------ATGACCTATGAATTGACAGCC 	2599
---------------------------------------------------ATGACCTATGAATTGACAGC 	193
---------------------------------------------------ATGACCTATGAATTGACAG 	6
----------------------------------------------------TGACCTATGAATTGACAGCCA 	21
----------------------------------------------------TGACCTATGAATTGACAGCC 	10
----------------------------------------------------TGACCTATGAATTGACAGC 	1
-------------------------------------------------------------------------------------------CCTGTCAGTTCTGTAGGCCACTG 	10
-------------------------------------------------------------------------------------------CCTGTCAGTTCTGTAGGCCACT 	2
--------------------------------------------------------------------------------------------CTGTCAGTTCTGTAGGCCACTG 	4
---------------------------------------------------------------------------------------------TGTCAGTTCTGTAGGCCACTG 	1


Overlaps with: MNEST034340
Overlaps with miRBase pre-miRNAs: dre-mir-192
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540643 ATGACCTATGAATTGACAGCCA CCTGTCAGTTCTGTAGGCCACTG up 3 1


Secondary structure

AAGGCGCTTGCATGTTAGCGGAGAGCATGGTTAAGTCTAGGACACAGGGTGATGACCTATGAATTGACAGCCAGTGTTTGCAGTCCAGCTGCCTGTCAGTTCTGTAGGCCACTGCCCTGTTTATCCTACTAAACACACACTGATCTGCTTAGAGACTGCAGG
---------------------------------------------------ATGACCTATGAATTGACAGCCA 	18
---------------------------------------------------ATGACCTATGAATTGACAGCC 	6
---------------------------------------------------ATGACCTATGAATTGACAGC 	1
-------------------------------------------------------------------------------------------CCTGTCAGTTCTGTAGGCCACTG 	4
-------------------------------------------------------------------------------------------CCTGTCAGTTCTGTAGGCCACT 	1


Overlaps with: MNEST034340
Overlaps with miRBase pre-miRNAs: dre-mir-192
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540646 ATGACCTATGAATTGACAGCCA CCTGTCAGTTCTGTAGGCCACTG up 3 1


Secondary structure

AAGGCGCTTGCATGTTAGCGGAGAGCATGGTTAAGTCTAGGACACAGGGTGATGACCTATGAATTGACAGCCAGTGTTTGCAGTCCAGCTGCCTGTCAGTTCTGTAGGCCACTGCCCTGTTTATCCTACTAAACACACACTGATCTGCTTAGAGACTGCAGG
--------------------------------------------------GATGACCTATGAATTGACAGCC 	164
--------------------------------------------------GATGACCTATGAATTGACAGC 	10
--------------------------------------------------GATGACCTATGAATTGACAGCCA 	3
---------------------------------------------------ATGACCTATGAATTGACAGCCAG 	8
---------------------------------------------------ATGACCTATGAATTGACAGCCA 	30916
---------------------------------------------------ATGACCTATGAATTGACAG 	9
---------------------------------------------------ATGACCTATGAATTGACAGC 	342
---------------------------------------------------ATGACCTATGAATTGACAGCC 	10074
----------------------------------------------------TGACCTATGAATTGACAGCCA 	76
----------------------------------------------------TGACCTATGAATTGACAGCC 	19
----------------------------------------------------TGACCTATGAATTGACAGC 	1
-----------------------------------------------------GACCTATGAATTGACAGCCA 	1
-------------------------------------------------------------------------------------------CCTGTCAGTTCTGTAGGCCACTG 	69
-------------------------------------------------------------------------------------------CCTGTCAGTTCTGTAGGCCACTGC 	7
-------------------------------------------------------------------------------------------CCTGTCAGTTCTGTAGGCCACT 	6
--------------------------------------------------------------------------------------------CTGTCAGTTCTGTAGGCCACTG 	29
---------------------------------------------------------------------------------------------TGTCAGTTCTGTAGGCCACTGC 	2
---------------------------------------------------------------------------------------------TGTCAGTTCTGTAGGCCACTG 	1


Overlaps with: MNEST034340
Overlaps with miRBase pre-miRNAs: dre-mir-192
HuntMi prediction: true miRNA