miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: ATGCACTGCCTCTTCCCTGGC

selected species: Arabidopsis thaliana



9 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM304282 ATGCACTGCCTCTTCCCTGGC CAGGGAACAAGCAGAGCATGG down 5 0


Secondary structure

ATGAGAGAGAGACAGGGAACAAGCAGAGCATGGATTGAGTTTACTAAAACATTAAACGACTCTGTTTTGTCTCTACCCATGCACTGCCTCTTCCCTGGCTCCCTCTTT
-----------ACAGGGAACAAGCAGAGCATG 	1
-----------ACAGGGAACAAGCAGAGCAT 	1
-----------ACAGGGAACAAGCAGAGCA 	1
------------CAGGGAACAAGCAGAGCATGG 	2
-----------------------------------------------------------------------------CATGCACTGCCTCTTCCCTGGC 	1
------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGGC 	198
------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGG 	3
-------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGCTC 	3
-------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGCT 	4
-------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGC 	12
-------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGG 	1


Overlaps with: MNEST003348
Overlaps with miRBase pre-miRNAs: ath-MIR408
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM415785 ATGCACTGCCTCTTCCCTGGC CAGGGAACAAGCAGAGCATGG down 5 0


Secondary structure

ATGAGAGAGAGACAGGGAACAAGCAGAGCATGGATTGAGTTTACTAAAACATTAAACGACTCTGTTTTGTCTCTACCCATGCACTGCCTCTTCCCTGGCTCCCTCTTT
---------AGACAGGGAACAAGCAGAGCA 	1
-----------ACAGGGAACAAGCAGAGCATG 	1
-----------------------------------------------------------------------------CATGCACTGCCTCTTCCCTGGCTC 	1
------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGGCTC 	2
------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGGC 	43
-------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGCTC 	3
--------------------------------------------------------------------------------GCACTGCCTCTTCCCTGGCT 	1


Overlaps with: MNEST003348
Overlaps with miRBase pre-miRNAs: ath-MIR408
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM366870 ATGCACTGCCTCTTCCCTGGC CAGGGAACAAGCAGAGCATGG down 5 0


Secondary structure

ATGAGAGAGAGACAGGGAACAAGCAGAGCATGGATTGAGTTTACTAAAACATTAAACGACTCTGTTTTGTCTCTACCCATGCACTGCCTCTTCCCTGGCTCCCTCTTT
-----------ACAGGGAACAAGCAGAGCATG 	1
------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGGC 	82
------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTG 	1
-------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGC 	5


Overlaps with: MNEST003348
Overlaps with miRBase pre-miRNAs: ath-MIR408
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM366869 ATGCACTGCCTCTTCCCTGGC CAGGGAACAAGCAGAGCATGG down 5 0


Secondary structure

ATGAGAGAGAGACAGGGAACAAGCAGAGCATGGATTGAGTTTACTAAAACATTAAACGACTCTGTTTTGTCTCTACCCATGCACTGCCTCTTCCCTGGCTCCCTCTTT
------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGGC 	21
-------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGC 	2


Overlaps with: MNEST003348
Overlaps with miRBase pre-miRNAs: ath-MIR408
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Arabidopsis thaliana GSM304284 ATGCACTGCCTCTTCCCTGGC CAGGGAACAAGCAGAGCATGG down 5 0


Secondary structure

ATGAGAGAGAGACAGGGAACAAGCAGAGCATGGATTGAGTTTACTAAAACATTAAACGACTCTGTTTTGTCTCTACCCATGCACTGCCTCTTCCCTGGCTCCCTCTTT
------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGGC 	24
------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGG 	1
-------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGCTC 	1
-------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGCT 	5
-------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGC 	2


Overlaps with: MNEST003348
Overlaps with miRBase pre-miRNAs: ath-MIR408
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Arabidopsis thaliana GSM366866 ATGCACTGCCTCTTCCCTGGC CAGGGAACAAGCAGAGCATGG down 5 0


Secondary structure

ATGAGAGAGAGACAGGGAACAAGCAGAGCATGGATTGAGTTTACTAAAACATTAAACGACTCTGTTTTGTCTCTACCCATGCACTGCCTCTTCCCTGGCTCCCTCTTT
-----------ACAGGGAACAAGCAGAGCATG 	6
------------CAGGGAACAAGCAGAGCATGG 	7
------------CAGGGAACAAGCAGAGCATG 	3
-----------------------------------------------------------------------------CATGCACTGCCTCTTCCCTGGC 	1
------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGGCT 	1
------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGGCTC 	15
------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGG 	1
------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGGC 	1266
-------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGC 	68
-------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGCTC 	8
-------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGCT 	9
--------------------------------------------------------------------------------GCACTGCCTCTTCCCTGGC 	1


Overlaps with: MNEST003348
Overlaps with miRBase pre-miRNAs: ath-MIR408
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Arabidopsis thaliana GSM304283 ATGCACTGCCTCTTCCCTGGC CAGGGAACAAGCAGAGCATGG down 5 0


Secondary structure

ATGAGAGAGAGACAGGGAACAAGCAGAGCATGGATTGAGTTTACTAAAACATTAAACGACTCTGTTTTGTCTCTACCCATGCACTGCCTCTTCCCTGGCTCCCTCTTT
-----------ACAGGGAACAAGCAGAGCATG 	34
-----------ACAGGGAACAAGCAGAGCAT 	3
-----------ACAGGGAACAAGCAGAGCA 	1
-----------------------------------------------------------------------------CATGCACTGCCTCTTCCCTGGC 	4
------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGGCTC 	63
------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGGCT 	2
------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGGC 	10686
------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGG 	63
------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTG 	31
-------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGCT 	1
-------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGC 	5


Overlaps with: MNEST003348
Overlaps with miRBase pre-miRNAs: ath-MIR408
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Arabidopsis thaliana GSM304285 ATGCACTGCCTCTTCCCTGGC CAGGGAACAAGCAGAGCATGG down 5 0


Secondary structure

ATGAGAGAGAGACAGGGAACAAGCAGAGCATGGATTGAGTTTACTAAAACATTAAACGACTCTGTTTTGTCTCTACCCATGCACTGCCTCTTCCCTGGCTCCCTCTTT
------------CAGGGAACAAGCAGAGCATG 	4
------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGGCTC 	3
------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGGC 	102
------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGG 	6
------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTG 	5
--------------------------------------------------------------------------------GCACTGCCTCTTCCCTGGC 	1


Overlaps with: MNEST003348
Overlaps with miRBase pre-miRNAs: ath-MIR408
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Arabidopsis thaliana GSM518432-13544 ATGCACTGCCTCTTCCCTGGC CAGGGAACAAGCAGAGCATGG down 5 0


Secondary structure

ATGAGAGAGAGACAGGGAACAAGCAGAGCATGGATTGAGTTTACTAAAACATTAAACGACTCTGTTTTGTCTCTACCCATGCACTGCCTCTTCCCTGGCTCCCTCTTT
-----------ACAGGGAACAAGCAGAGCATG 	30
------------CAGGGAACAAGCAGAGCATGG 	16
------------CAGGGAACAAGCAGAGCATG 	1
-----------------------------------------------------------------------------CATGCACTGCCTCTTCCCTGGC 	8
------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGGCTC 	6
------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGGC 	5146
------------------------------------------------------------------------------ATGCACTGCCTCTTCCCTGG 	3
-------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGC 	308
-------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGG 	4
-------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGCTC 	20
-------------------------------------------------------------------------------TGCACTGCCTCTTCCCTGGCT 	23
--------------------------------------------------------------------------------GCACTGCCTCTTCCCTGGC 	1
---------------------------------------------------------------------------------CACTGCCTCTTCCCTGGCTCCC 	3
---------------------------------------------------------------------------------CACTGCCTCTTCCCTGGCT 	1
---------------------------------------------------------------------------------------CTCTTCCCTGGCTCCCTCTTT 	1


Overlaps with: MNEST003348
Overlaps with miRBase pre-miRNAs: ath-MIR408
HuntMi prediction: true miRNA