miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: ATTCCTAGAAATTGTTCACAAT

selected species: Mus musculus



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM539869 ATTCCTAGAAATTGTTCACAAT TGTAAACAATTCCTAGGCAATGT down 2 1


Secondary structure

TAAATCAGGAATTGTAAACAATTCCTAGGCAATGTGTATAATGTTGGTAAGTCATTCCTAGAAATTGTTCACAATGCCTGTAAC
------------TGTAAACAATTCCTAGGCAATGTGT 	1
------------TGTAAACAATTCCTAGGCAATGTG 	2
------------TGTAAACAATTCCTAGGCAATGT 	135
------------TGTAAACAATTCCTAGGCAAT 	5
------------TGTAAACAATTCCTAGGCAA 	1
------------TGTAAACAATTCCTAGGCAATG 	14
--------------TAAACAATTCCTAGGCAATGTG 	5
--------------TAAACAATTCCTAGGCAATG 	1
--------------TAAACAATTCCTAGGCAATGTGT 	2
---------------AAACAATTCCTAGGCAATGTGT 	2
---------------------------------------------------TCATTCCTAGAAATTGTTCACA 	15
---------------------------------------------------TCATTCCTAGAAATTGTTCAC 	3
----------------------------------------------------CATTCCTAGAAATTGTTCACAA 	1
-----------------------------------------------------ATTCCTAGAAATTGTTCACAAT 	161
-----------------------------------------------------ATTCCTAGAAATTGTTCACAA 	11
-----------------------------------------------------ATTCCTAGAAATTGTTCACA 	2
-----------------------------------------------------ATTCCTAGAAATTGTTCAC 	4
------------------------------------------------------TTCCTAGAAATTGTTCACAAT 	5
------------------------------------------------------TTCCTAGAAATTGTTCACAA 	2
-------------------------------------------------------TCCTAGAAATTGTTCACAAT 	1


Overlaps with: MNEST032057 MNEST032058
Overlaps with miRBase pre-miRNAs: mmu-mir-384 cgr-mir-384
HuntMi prediction: true miRNA