miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: ATTGAGTGCAGCGTTGATGAA

selected species: Brachypodium distachyon



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Brachypodium distachyon GSM506620-12051 ATTGAGTGCAGCGTTGATGAA CACCGGCGCTGCACACAGTGA up 2 0


Secondary structure

GAAGAGGAATTAGAAGAGGCGCAAAGGCATCATTGAGTGCAGCGTTGATGAACAGGGGCCAGGCGACCGGCGGCCGGTCCGGTTCGGTTCACCGGCGCTGCACACAGTGACGCCCTTGCATTCTCTGGCCCGATTCAT
---------------------------CATCATTGAGTGCAGCGTTGA 	13
----------------------------ATCATTGAGTGCAGCGTTGAT 	1
----------------------------ATCATTGAGTGCAGCGTTGA 	1
-----------------------------TCATTGAGTGCAGCGTTGATG 	3
-----------------------------TCATTGAGTGCAGCGTTGAT 	5
------------------------------CATTGAGTGCAGCGTTGATGAA 	6
-------------------------------ATTGAGTGCAGCGTTGATGAAC 	6
-------------------------------ATTGAGTGCAGCGTTGATGAA 	22599
-------------------------------ATTGAGTGCAGCGTTGATGA 	648
-------------------------------ATTGAGTGCAGCGTTGATG 	1
--------------------------------TTGAGTGCAGCGTTGATGAACAGG 	6
--------------------------------TTGAGTGCAGCGTTGATGAACA 	2
--------------------------------TTGAGTGCAGCGTTGATGAAC 	1379
--------------------------------TTGAGTGCAGCGTTGATGAA 	80
--------------------------------TTGAGTGCAGCGTTGATGA 	5
---------------------------------TGAGTGCAGCGTTGATGAACAGGGG 	1
---------------------------------TGAGTGCAGCGTTGATGAAC 	5
---------------------------------TGAGTGCAGCGTTGATGAA 	13
----------------------------------------------------------------------------------------TCACCGGCGCTGCACACAGTG 	2
----------------------------------------------------------------------------------------TCACCGGCGCTGCACACAGT 	1
----------------------------------------------------------------------------------------TCACCGGCGCTGCACACAG 	1
-----------------------------------------------------------------------------------------CACCGGCGCTGCACACAGTGA 	2


Overlaps with: MNEST041798
Overlaps with miRBase pre-miRNAs: bdi-MIR397a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Brachypodium distachyon GSM506620-12051 ATTGAGTGCAGCGTTGATGAA CTTCGACCCTGCACCCAATCA up 3 0


Secondary structure

AAGAAGAGGCGCAGAGGCTTGATTGAGTGCAGCGTTGATGAACCCCTCTGCGCCCAGGCCGGCCATGGAACGCGGGGGGTTCTTCGACCCTGCACCCAATCACGCCTCTGCTTTCCTCTA
------------------TTGATTGAGTGCAGCGTTGAT 	5
---------------------ATTGAGTGCAGCGTTGATGAACCC 	22
---------------------ATTGAGTGCAGCGTTGATGAACC 	4
---------------------ATTGAGTGCAGCGTTGATGAAC 	6
---------------------ATTGAGTGCAGCGTTGATGAA 	22599
---------------------ATTGAGTGCAGCGTTGATGA 	648
---------------------ATTGAGTGCAGCGTTGATG 	1
----------------------TTGAGTGCAGCGTTGATGAACCCC 	2
----------------------TTGAGTGCAGCGTTGATGAACC 	12
----------------------TTGAGTGCAGCGTTGATGAAC 	1379
----------------------TTGAGTGCAGCGTTGATGAA 	80
----------------------TTGAGTGCAGCGTTGATGA 	5
-----------------------TGAGTGCAGCGTTGATGAAC 	5
-----------------------TGAGTGCAGCGTTGATGAA 	13
--------------------------GTGCAGCGTTGATGAACCCCT 	1
--------------------------GTGCAGCGTTGATGAACCC 	1
---------------------------TGCAGCGTTGATGAACCCCTC 	2
-----------------------------------TGATGAACCCCTCTGCGCCCAGGC 	2
-----------------------------------TGATGAACCCCTCTGCGCCCAG 	1
-----------------------------------------------CTGCGCCCAGGCCGGCCATGGAAC 	1
---------------------------------------------------GCCCAGGCCGGCCATGGAACG 	1
---------------------------------------------------GCCCAGGCCGGCCATGGAA 	2
--------------------------------------------------------------CCATGGAACGCGGGGGGTT 	1
--------------------------------------------------------------------------------TCTTCGACCCTGCACCCAATC 	11
--------------------------------------------------------------------------------TCTTCGACCCTGCACCCAA 	1
---------------------------------------------------------------------------------CTTCGACCCTGCACCCAATCA 	2



HuntMi prediction: true miRNA