miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: ATTGGTATCCCTGTCAAGGTCT

selected species: Caenorhabditis elegans



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM297751-9445 ATTGGTATCCCTGTCAAGGTCT GACCTGGCCAGGCATTCCAACTG down 6 1


Secondary structure

ATTCAAACTCGCGACGGCTGGCGACCTGGCCAGGCATTCCAACTGTCAAACTTACAAAGCTTTCTCGACAATTGGTATCCCTGTCAAGGTCTCAATCCGTTCAGCGAATTC
-----------------------ACCTGGCCAGGCATTCCAACTG 	2
-----------------------ACCTGGCCAGGCATTCCAACTGT 	1
--------------------------------------------------------------------CAATTGGTATCCCTGTCAAGG 	1
---------------------------------------------------------------------AATTGGTATCCCTGTCAAGGTC 	1
---------------------------------------------------------------------AATTGGTATCCCTGTCAAGGTCT 	17
---------------------------------------------------------------------AATTGGTATCCCTGTCAAGGT 	2
----------------------------------------------------------------------ATTGGTATCCCTGTCAAGGTCT 	65
----------------------------------------------------------------------ATTGGTATCCCTGTCAAGGT 	2
-----------------------------------------------------------------------TTGGTATCCCTGTCAAGGTCT 	1
------------------------------------------------------------------------TGGTATCCCTGTCAAGGTCT 	1
-------------------------------------------------------------------------GGTATCCCTGTCAAGGTCT 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM297752-9446 ATTGGTATCCCTGTCAAGGTCT GACCTGGCCAGGCATTCCAACTG down 6 1


Secondary structure

ATTCAAACTCGCGACGGCTGGCGACCTGGCCAGGCATTCCAACTGTCAAACTTACAAAGCTTTCTCGACAATTGGTATCCCTGTCAAGGTCTCAATCCGTTCAGCGAATTC
-----------------------ACCTGGCCAGGCATTCCAACTGT 	5
-----------------------ACCTGGCCAGGCATTCCAAC 	1
-----------------------ACCTGGCCAGGCATTCCAACTG 	3
--------------------------------------------------------------------CAATTGGTATCCCTGTCAAGGTCT 	3
---------------------------------------------------------------------AATTGGTATCCCTGTCAAGGTCT 	22
---------------------------------------------------------------------AATTGGTATCCCTGTCAAGGT 	2
----------------------------------------------------------------------ATTGGTATCCCTGTCAAGGTC 	2
----------------------------------------------------------------------ATTGGTATCCCTGTCAAGGTCT 	72
-----------------------------------------------------------------------TTGGTATCCCTGTCAAGGTCT 	4
-------------------------------------------------------------------------GGTATCCCTGTCAAGGTCT 	1


HuntMi prediction: true miRNA