miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: ATTGGTCCCCTCCAAGTAGCTC

selected species: Caenorhabditis elegans



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427344-5691 ATTGGTCCCCTCCAAGTAGCTC GCTATTTGCAAGGTACCTAATTG down 4 1


Secondary structure

TCACTGAATTCAATGTTGGAGAGCTATTTGCAAGGTACCTAATTGTTTGATTATTGATTCTCAATTGGTCCCCTCCAAGTAGCTCTATTGCATTGTTTGCTTAT
---------------------------------------------------------------ATTGGTCCCCTCCAAGTAGCTC 	11

Overlaps with: MNEST038349
Overlaps with miRBase pre-miRNAs: cel-mir-245
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427332-5684 ATTGGTCCCCTCCAAGTAGCTC GCTATTTGCAAGGTACCTAATTG down 4 1


Secondary structure

TCACTGAATTCAATGTTGGAGAGCTATTTGCAAGGTACCTAATTGTTTGATTATTGATTCTCAATTGGTCCCCTCCAAGTAGCTCTATTGCATTGTTTGCTTAT
----------------------GCTATTTGCAAGGTACCTAATTG 	1
---------------------------------------------------------------ATTGGTCCCCTCCAAGTAGCTC 	31
----------------------------------------------------------------TTGGTCCCCTCCAAGTAGCTCT 	1

Overlaps with: MNEST038349
Overlaps with miRBase pre-miRNAs: cel-mir-245
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM427346-5695 ATTGGTCCCCTCCAAGTAGCTC GCTATTTGCAAGGTACCTAATTG down 4 1


Secondary structure

TCACTGAATTCAATGTTGGAGAGCTATTTGCAAGGTACCTAATTGTTTGATTATTGATTCTCAATTGGTCCCCTCCAAGTAGCTCTATTGCATTGTTTGCTTAT
----------------------GCTATTTGCAAGGTACCTAATTG 	1
----------------------GCTATTTGCAAGGTACCTAATT 	1
---------------------------------------------------------------ATTGGTCCCCTCCAAGTAGCTC 	42
---------------------------------------------------------------ATTGGTCCCCTCCAAGTAGCT 	2
---------------------------------------------------------------ATTGGTCCCCTCCAAGTAGCTCT 	1
---------------------------------------------------------------ATTGGTCCCCTCCAAGTAG 	1
----------------------------------------------------------------TTGGTCCCCTCCAAGTAGCTCT 	1

Overlaps with: MNEST038349
Overlaps with miRBase pre-miRNAs: cel-mir-245
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Caenorhabditis elegans GSM427345-5693 ATTGGTCCCCTCCAAGTAGCTC GCTATTTGCAAGGTACCTAATTG down 4 1


Secondary structure

TCACTGAATTCAATGTTGGAGAGCTATTTGCAAGGTACCTAATTGTTTGATTATTGATTCTCAATTGGTCCCCTCCAAGTAGCTCTATTGCATTGTTTGCTTAT
---------------------------------------------------------------ATTGGTCCCCTCCAAGTAGCTC 	13

Overlaps with: MNEST038349
Overlaps with miRBase pre-miRNAs: cel-mir-245
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Caenorhabditis elegans GSM297751-9445 ATTGGTCCCCTCCAAGTAGCTC GCTATTTGCAAGGTACCTAATTG down 4 1


Secondary structure

TCACTGAATTCAATGTTGGAGAGCTATTTGCAAGGTACCTAATTGTTTGATTATTGATTCTCAATTGGTCCCCTCCAAGTAGCTCTATTGCATTGTTTGCTTAT
--------------------------------------------------------------AATTGGTCCCCTCCAAGTAGCTCT 	1
---------------------------------------------------------------ATTGGTCCCCTCCAAGTAGCTCT 	1
---------------------------------------------------------------ATTGGTCCCCTCCAAGTAGCT 	24
---------------------------------------------------------------ATTGGTCCCCTCCAAGTAGCTC 	139
----------------------------------------------------------------TTGGTCCCCTCCAAGTAGCTC 	1

Overlaps with: MNEST038349
Overlaps with miRBase pre-miRNAs: cel-mir-245
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Caenorhabditis elegans GSM297752-9446 ATTGGTCCCCTCCAAGTAGCTC GCTATTTGCAAGGTACCTAATTG down 4 1


Secondary structure

TCACTGAATTCAATGTTGGAGAGCTATTTGCAAGGTACCTAATTGTTTGATTATTGATTCTCAATTGGTCCCCTCCAAGTAGCTCTATTGCATTGTTTGCTTAT
---------------------------------------------------------------ATTGGTCCCCTCCAAGTAGCTC 	199
---------------------------------------------------------------ATTGGTCCCCTCCAAGTAGCT 	21
---------------------------------------------------------------ATTGGTCCCCTCCAAGTAGC 	1
----------------------------------------------------------------TTGGTCCCCTCCAAGTAGCTC 	7
-----------------------------------------------------------------TGGTCCCCTCCAAGTAGCTC 	1

Overlaps with: MNEST038349
Overlaps with miRBase pre-miRNAs: cel-mir-245
HuntMi prediction: true miRNA