miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: ATTGGTTAAGATATTGCATCGT

selected species: Bombyx mori



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Bombyx mori GSM449725_whole_body_clean ATTGGTTAAGATATTGCATCGT GGTGAAATATTTTGACCAATTT down 2 0


Secondary structure

TGCTGAAGAATCCGAAGACACCCACCCACCCGTCGGGCGACCGGTGAAATATTTTGACCAATTTTATATATCGGTCTGATCGTTGACTCAAGGTGAATTGGTTAAGATATTGCATCGTTTGCTCGATCCGGGATGGTCGCCGTGATCTCGCTTTGTG
------------------------------------------------------------------------------------------------ATTGGTTAAGATATTGCATCGT 	6
-------------------------------------------------------------------------------------------------TTGGTTAAGATATTGCATCGTT 	2
-------------------------------------------------------------------------------------------------TTGGTTAAGATATTGCATCGT 	2

Overlaps with: MNEST035632
Overlaps with miRBase pre-miRNAs: bmo-mir-2768
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Bombyx mori GSM449726_Anterior_silkgland_clean ATTGGTTAAGATATTGCATCGT GGTGAAATATTTTGACCAATTT down 2 0


Secondary structure

TGCTGAAGAATCCGAAGACACCCACCCACCCGTCGGGCGACCGGTGAAATATTTTGACCAATTTTATATATCGGTCTGATCGTTGACTCAAGGTGAATTGGTTAAGATATTGCATCGTTTGCTCGATCCGGGATGGTCGCCGTGATCTCGCTTTGTG
-----------------------ACCCACCCGTCGGGCGACC 	1
-----------------------------------------CGGTGAAATATTTTGACCAATT 	4
-----------------------------------------CGGTGAAATATTTTGACCAAT 	1
------------------------------------------------------------------------------------------------ATTGGTTAAGATATTGCATCGT 	176
------------------------------------------------------------------------------------------------ATTGGTTAAGATATTGCATC 	9
------------------------------------------------------------------------------------------------ATTGGTTAAGATATTGCATCG 	2
------------------------------------------------------------------------------------------------ATTGGTTAAGATATTGCATCGTTTG 	1
-------------------------------------------------------------------------------------------------TTGGTTAAGATATTGCATCGTT 	34
-------------------------------------------------------------------------------------------------TTGGTTAAGATATTGCATCGT 	37
-------------------------------------------------------------------------------------------------TTGGTTAAGATATTGCATCGTTT 	6
-------------------------------------------------------------------------------------------------TTGGTTAAGATATTGCATC 	3
--------------------------------------------------------------------------------------------------TGGTTAAGATATTGCATCGTTT 	1
--------------------------------------------------------------------------------------------------TGGTTAAGATATTGCATCGT 	1
---------------------------------------------------------------------------------------------------GGTTAAGATATTGCATCGTT 	3

Overlaps with: MNEST035632
Overlaps with miRBase pre-miRNAs: bmo-mir-2768
HuntMi prediction: true miRNA