miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: ATTGGTTTCTAGATCTCAGCA

selected species: Acyrthosiphon pisum



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Acyrthosiphon pisum GSM502519_unique_quant ATTGGTTTCTAGATCTCAGCA CTGGGATTTAGAAAGCAATAT up 1 0


Secondary structure

CAAATTTTTGACATCTGTTTTATTGGTTTCTAGATCTCAGCATTTAAATTGATTGTTGCTGGGATTTAGAAAGCAATATAACAGTTGTGCAGTTGAC
-------------------TTATTGGTTTCTAGATCTCAGCA 	2
--------------------TATTGGTTTCTAGATCTCAGCA 	1
---------------------ATTGGTTTCTAGATCTCAGCATTTAA 	1
---------------------ATTGGTTTCTAGATCTCAGCATT 	3
---------------------ATTGGTTTCTAGATCTCAGCAT 	43
---------------------ATTGGTTTCTAGATCTCAGCA 	1031
---------------------ATTGGTTTCTAGATCTCAGC 	1
---------------------ATTGGTTTCTAGATCTCAG 	5
----------------------TTGGTTTCTAGATCTCAGCATT 	1
----------------------TTGGTTTCTAGATCTCAGCA 	1
-------------------------------------------------------TTGCTGGGATTTAGAAAGCAATAT 	1
--------------------------------------------------------TGCTGGGATTTAGAAAGCAATAT 	2
---------------------------------------------------------GCTGGGATTTAGAAAGCAATAT 	1
----------------------------------------------------------CTGGGATTTAGAAAGCAATATA 	3
----------------------------------------------------------CTGGGATTTAGAAAGCAATAT 	85
----------------------------------------------------------CTGGGATTTAGAAAGCAATA 	2
----------------------------------------------------------CTGGGATTTAGAAAGCAAT 	1


Overlaps with: MNEST035135 MNEST035136
Overlaps with miRBase pre-miRNAs: api-mir-3036-5 api-mir-3036-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Acyrthosiphon pisum GSM502519_unique_quant ATTGGTTTCTAGATCTCAGCA CTGGGATTTAGAAACCAATAT up 0 0


Secondary structure

CAATTTTTTGACATCGGTTTTATTGGTTTCTAGATCTCAGCATTTAAATTGATTGTTGCTGGGATTTAGAAACCAATATAACAGTTGTACAGTTGAC
-------------------TTATTGGTTTCTAGATCTCAGCA 	2
--------------------TATTGGTTTCTAGATCTCAGCA 	1
---------------------ATTGGTTTCTAGATCTCAGCATTTAA 	1
---------------------ATTGGTTTCTAGATCTCAGCATT 	3
---------------------ATTGGTTTCTAGATCTCAGCAT 	43
---------------------ATTGGTTTCTAGATCTCAGCA 	1031
---------------------ATTGGTTTCTAGATCTCAGC 	1
---------------------ATTGGTTTCTAGATCTCAG 	5
----------------------TTGGTTTCTAGATCTCAGCATT 	1
----------------------TTGGTTTCTAGATCTCAGCA 	1
----------------------------------------------------------CTGGGATTTAGAAACCAATAT 	1


Overlaps with: MNEST035134
Overlaps with miRBase pre-miRNAs: api-mir-3036-3
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Acyrthosiphon pisum GSM502519_unique_quant ATTGGTTTCTAGATCTCAGCA CTGGGATTTAGAAAGCAATAT up 1 0


Secondary structure

ACATCGGTTTTATTGGTTTCTAGATCTCAGCATTTAAATTGATTGTTGCTGGGATTTAGAAAGCAATATAACAGTTG
---------TTATTGGTTTCTAGATCTCAGCA 	2
----------TATTGGTTTCTAGATCTCAGCA 	1
-----------ATTGGTTTCTAGATCTCAGCATTTAA 	1
-----------ATTGGTTTCTAGATCTCAGCATT 	3
-----------ATTGGTTTCTAGATCTCAGCAT 	43
-----------ATTGGTTTCTAGATCTCAGCA 	1031
-----------ATTGGTTTCTAGATCTCAGC 	1
-----------ATTGGTTTCTAGATCTCAG 	5
------------TTGGTTTCTAGATCTCAGCATT 	1
------------TTGGTTTCTAGATCTCAGCA 	1
---------------------------------------------TTGCTGGGATTTAGAAAGCAATAT 	1
----------------------------------------------TGCTGGGATTTAGAAAGCAATAT 	2
-----------------------------------------------GCTGGGATTTAGAAAGCAATAT 	1
------------------------------------------------CTGGGATTTAGAAAGCAATATA 	3
------------------------------------------------CTGGGATTTAGAAAGCAATAT 	85
------------------------------------------------CTGGGATTTAGAAAGCAATA 	2
------------------------------------------------CTGGGATTTAGAAAGCAAT 	1


Overlaps with: MNEST035135 MNEST035136
Overlaps with miRBase pre-miRNAs: api-mir-3036-5 api-mir-3036-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Acyrthosiphon pisum GSM502519_unique_quant ATTGGTTTCTAGATCTCAGCA CTGGGACTTAGAAAGCAATAT up 2 0


Secondary structure

ATCATTTTTGACATCGGTTTTATTGGTTTCTAGATCTCAGCATATAAATTGATTGTTGCTGGGACTTAGAAAGCAATATAACAGTTGTGCAGTTGAC
-------------------TTATTGGTTTCTAGATCTCAGCA 	2
--------------------TATTGGTTTCTAGATCTCAGCA 	1
---------------------ATTGGTTTCTAGATCTCAGCATA 	2
---------------------ATTGGTTTCTAGATCTCAGCAT 	43
---------------------ATTGGTTTCTAGATCTCAGCA 	1031
---------------------ATTGGTTTCTAGATCTCAGC 	1
---------------------ATTGGTTTCTAGATCTCAG 	5
----------------------TTGGTTTCTAGATCTCAGCA 	1
--------------------------------------------------------TGCTGGGACTTAGAAAGCAATAT 	1
----------------------------------------------------------CTGGGACTTAGAAAGCAATAT 	120
----------------------------------------------------------CTGGGACTTAGAAAGCAATA 	2
----------------------------------------------------------CTGGGACTTAGAAAGCAATATA 	1


Overlaps with: MNEST035132 MNEST035133
Overlaps with miRBase pre-miRNAs: api-mir-3036-1 api-mir-3036-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Acyrthosiphon pisum GSM502519_unique_quant ATTGGTTTCTAGATCTCAGCA CTGGGACTTAGAAAGCAATAT up 2 0


Secondary structure

ACATCGGTTTTATTGGTTTCTAGATCTCAGCATATAAATTGATTGTTGCTGGGACTTAGAAAGCAATATAACAGTTG
---------TTATTGGTTTCTAGATCTCAGCA 	2
----------TATTGGTTTCTAGATCTCAGCA 	1
-----------ATTGGTTTCTAGATCTCAGCATA 	2
-----------ATTGGTTTCTAGATCTCAGCAT 	43
-----------ATTGGTTTCTAGATCTCAGCA 	1031
-----------ATTGGTTTCTAGATCTCAGC 	1
-----------ATTGGTTTCTAGATCTCAG 	5
------------TTGGTTTCTAGATCTCAGCA 	1
----------------------------------------------TGCTGGGACTTAGAAAGCAATAT 	1
------------------------------------------------CTGGGACTTAGAAAGCAATAT 	120
------------------------------------------------CTGGGACTTAGAAAGCAATA 	2
------------------------------------------------CTGGGACTTAGAAAGCAATATA 	1


Overlaps with: MNEST035132 MNEST035133
Overlaps with miRBase pre-miRNAs: api-mir-3036-1 api-mir-3036-2
HuntMi prediction: true miRNA