miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CAAAACATTCAAAACTCCCTAC

selected species: Acyrthosiphon pisum



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Acyrthosiphon pisum GSM502519_unique_quant CAAAACATTCAAAACTCCCTAC AGGGAGTTTTGAATGTTGTTGTA down 1 1


Secondary structure

AGAATGATTTTCTATGGGTATTAGGGAGTTTTGAATGTTGTTGTAAAATATTTAAACAATACAAAACATTCAAAACTCCCTACTATCCTTAGGTACATACTA
----------------------AGGGAGTTTTGAATGTTGTTGTA 	53
----------------------AGGGAGTTTTGAATGTTGTTGT 	6
----------------------AGGGAGTTTTGAATGTTGTTG 	2
-------------------------------------------------------------CAAAACATTCAAAACTCCCTAC 	102
-------------------------------------------------------------CAAAACATTCAAAACTCCCTA 	38
-------------------------------------------------------------CAAAACATTCAAAACTCCCT 	3
-------------------------------------------------------------CAAAACATTCAAAACTCCC 	2
-------------------------------------------------------------CAAAACATTCAAAACTCCCTACT 	1

Overlaps with: MNEST035150
Overlaps with miRBase pre-miRNAs: api-mir-3047-1
HuntMi prediction: true miRNA