miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: CAAATGTTCCAATGGTCGGGCA

selected species: Drosophila melanogaster

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Drosophila melanogaster	GSM399107-16288	CAAATGTTCCAATGGTCGGGCA	CTGGCTCATTGGTACATTTCAT	down	2	2

Secondary structure

TATATTATATATAATAGCACTGCTGGCTCATTGGTACATTTCATAAGTACCTTATCAAATGTTCCAATGGTCGGGCAGAGCTATTATTTGTCCATG
----------------------CTGGCTCATTGGTACATTTCAT 	1
-------------------------------------------------------CAAATGTTCCAATGGTCGGG 	7
-------------------------------------------------------CAAATGTTCCAATGGTCGGGC 	3
-------------------------------------------------------CAAATGTTCCAATGGTCGGGCA 	68
-------------------------------------------------------CAAATGTTCCAATGGTCGG 	4
--------------------------------------------------------AAATGTTCCAATGGTCGGGCA 	2

Overlaps with: MNEST036547 MNEST036548
Overlaps with miRBase pre-miRNAs: dme-mir-985
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Drosophila melanogaster	GSM399105-16286	CAAATGTTCCAATGGTCGGGCA	CTGGCTCATTGGTACATTTCAT	down	2	2

Secondary structure

TATATTATATATAATAGCACTGCTGGCTCATTGGTACATTTCATAAGTACCTTATCAAATGTTCCAATGGTCGGGCAGAGCTATTATTTGTCCATG
----------------------CTGGCTCATTGGTACATTTCA 	8
----------------------CTGGCTCATTGGTACATTTCATAA 	1
----------------------CTGGCTCATTGGTACATTTC 	1
----------------------CTGGCTCATTGGTACATTTCAT 	13
-------------------------------------------------------CAAATGTTCCAATGGTCGGG 	4
-------------------------------------------------------CAAATGTTCCAATGGTCGGGC 	8
-------------------------------------------------------CAAATGTTCCAATGGTCGGGCA 	103
-------------------------------------------------------CAAATGTTCCAATGGTCGG 	2
--------------------------------------------------------AAATGTTCCAATGGTCGGGCA 	7
--------------------------------------------------------AAATGTTCCAATGGTCGGGC 	1

Overlaps with: MNEST036547 MNEST036548
Overlaps with miRBase pre-miRNAs: dme-mir-985
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Drosophila melanogaster	GSM286604-9792	CAAATGTTCCAATGGTCGGGCA	CTGGCTCATTGGTACATTTCAT	down	2	2

Secondary structure

TATATTATATATAATAGCACTGCTGGCTCATTGGTACATTTCATAAGTACCTTATCAAATGTTCCAATGGTCGGGCAGAGCTATTATTTGTCCATG
----------------------CTGGCTCATTGGTACATTTC 	1
----------------------------------TACATTTCATAAGTACCTTATCAAA 	2
-------------------------------------------------------CAAATGTTCCAATGGTCGGG 	2
-------------------------------------------------------CAAATGTTCCAATGGTCGGGCA 	13
--------------------------------------------------------AAATGTTCCAATGGTCGGGCA 	2
--------------------------------------------------------AAATGTTCCAATGGTCGGG 	1

Overlaps with: MNEST036547 MNEST036548
Overlaps with miRBase pre-miRNAs: dme-mir-985
HuntMi prediction: true miRNA