miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CAACGAGTCCCTGAAAAATCCC

selected species: Ciona intestinalis



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343285 CAACGAGTCCCTGAAAAATCCC GTGTTTCAGGGAATCGTTACA up 4 1


Secondary structure

CAAAAAATCTTCAACGAGTCCCTGAAAAATCCCGACATACAAATTCGGGTGTTTCAGGGAATCGTTACAGAAATGGC
-----------CAACGAGTCCCTGAAAAATCCCG 	140
-----------CAACGAGTCCCTGAAAAATCCC 	212
-----------CAACGAGTCCCTGAAAAATCC 	29
-----------CAACGAGTCCCTGAAAAATC 	35
-----------CAACGAGTCCCTGAAAAAT 	6
------------AACGAGTCCCTGAAAAATCCCG 	10
------------AACGAGTCCCTGAAAAATCCC 	1
------------AACGAGTCCCTGAAAAATCC 	1
------------AACGAGTCCCTGAAAAATC 	1
-----------------------------------------------GGTGTTTCAGGGAATCGTTACA 	3
-----------------------------------------------GGTGTTTCAGGGAATCGTTAC 	8
-----------------------------------------------GGTGTTTCAGGGAATCGTTA 	2
-----------------------------------------------GGTGTTTCAGGGAATCGTT 	5


Overlaps with: MNEST025112 MNEST025113
Overlaps with miRBase pre-miRNAs: cin-mir-4076
HuntMi prediction: true miRNA