miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CACAGAACATGCAGTGAGAACT

selected species: Mus musculus



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM539869 CACAGAACATGCAGTGAGAACT TGCTCATTGCATGGGCTGTGTA down 4 0


Secondary structure

AAGCATATTAGTCTCTAGGATGTGCTCATTGCATGGGCTGTGTAGATTTTTATTTAATACACAGAACATGCAGTGAGAACTTGATAGAGATTGGAAGACA
----------------------TGCTCATTGCATGGGCTGTGTA 	1
----------------------TGCTCATTGCATGGGCTGT 	1
-----------------------------------------------------------CACAGAACATGCAGTGAGAACTT 	2
-----------------------------------------------------------CACAGAACATGCAGTGAGAACT 	11
------------------------------------------------------------ACAGAACATGCAGTGAGAACTT 	1

Overlaps with: MNEST032430
Overlaps with miRBase pre-miRNAs: mmu-mir-1912
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM539870 CACAGAACATGCAGTGAGAACT TGCTCATTGCATGGGCTGTGTA down 4 0


Secondary structure

AAGCATATTAGTCTCTAGGATGTGCTCATTGCATGGGCTGTGTAGATTTTTATTTAATACACAGAACATGCAGTGAGAACTTGATAGAGATTGGAAGACA
-----------------------------------------------------------CACAGAACATGCAGTGAGAACTT 	3
-----------------------------------------------------------CACAGAACATGCAGTGAGAACT 	7

Overlaps with: MNEST032430
Overlaps with miRBase pre-miRNAs: mmu-mir-1912
HuntMi prediction: true miRNA