miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions




selected mature miRNA sequence: CACAGCAAGTGTAGACAGGCA

selected species: Mus musculus



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM539849 CACAGCAAGTGTAGACAGGCA CCTGTCTGTGCCTGCTGTACA down 2 0


Secondary structure

AGGCTGGGTTGTCATGTGACTGCCTGTCTGTGCCTGCTGTACAGGTGAGCGGATGTTCTGCACAGCAAGTGTAGACAGGCAGACACATGACAACTCTGTC
-----------------------------------------------------------GCACAGCAAGTGTAGACAGGCA 	3
------------------------------------------------------------CACAGCAAGTGTAGACAGGCAGA 	1
------------------------------------------------------------CACAGCAAGTGTAGACAGGCA 	5
-------------------------------------------------------------ACAGCAAGTGTAGACAGGCAG 	2

Overlaps with: MNEST027097 MNEST005029 MNEST005688 MNEST008275 MNEST029245 MNEST029246 MNEST033026 MNEST005773 MNEST032804 MNEST005163 MNEST027519 MNEST027625 MNEST027809 MNEST028236 MNEST028330 MNEST028531 MNEST030118 MNEST030289 MNEST030907 MNEST031941
Overlaps with miRBase pre-miRNAs: sla-mir-214 cgr-mir-214 eca-mir-214 ggo-mir-214 mne-mir-214 ptr-mir-214 hsa-mir-3120 mmu-mir-214 bta-mir-3120 rno-mir-214 rno-mir-3120 ppa-mir-214 ppy-mir-214 mml-mir-214 age-mir-214 hsa-mir-214
HuntMi prediction: true miRNA